BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470535
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05350.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1221 0.0
> AT1G05350.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:1560678-1564123 REVERSE LENGTH=1627
Length=1627
Score = 1221 bits (661), Expect = 0.0
Identities = 722/752 (96%), Gaps = 2/752 (0%)
Strand=Plus/Plus
Query 69 GAGAGCTGAACAATGGAGGTCGAATTCAAAGCATTGCTCGATGATCTTGATGTCCTCGAG 128
|||||||||| ||||||||| | |||||| |||||||||||||||||||| || ||||||
Sbjct 107 GAGAGCTGAAAAATGGAGGTTGGATTCAAGGCATTGCTCGATGATCTTGACGTTCTCGAG 166
Query 129 AAATCTCTCTCAGATCCGGCTCCGATTC-ACAAGCTCCGATCACATGTTGAGAATCTAGC 187
|||||||||||||||||||||| || || ||||||| |||||||||||||||||||||||
Sbjct 167 AAATCTCTCTCAGATCCGGCTCTGA-TCAACAAGCTGCGATCACATGTTGAGAATCTAGC 225
Query 188 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAATTAAGCTCGGAAGT 247
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 226 CACTCTGTCTAAATGTAATCCTCACCGGCGTTCCAAAGTCAAGGAACTAAGCTCGGAAGT 285
Query 248 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCGCTTCAGCGGATGGGTATTGTGGACAA 307
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 286 GGTAGATAGTAATCCTTACAGTAGGCTTATGGCACTTCAGCGGATGGGCATTGTGGACAA 345
Query 308 CTATGAGAGAATTAGAGAGTTTTCAGTCGCTATTGTTGGAATTGGTGGTGTTGGAAGTGT 367
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 346 CTATGAGAGAATTAGAGAGTTTTCCGTCGCCATTGTTGGAATTGGTGGTGTTGGAAGTGT 405
Query 368 TGCGGCTGAGATGCTGACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 427
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TGCGGCTGAGATGCTTACCAGATGTGGTATTGGTCGTCTTTTGTTGTATGACTATGACAC 465
Query 428 TGTGGAGCTAGCTAACATGAACAGACTGTTTTTTCGACCTGATCAGGTTGGTATGACAAA 487
||| || ||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 466 TGTCGAACTAGCTAACATGAACAGACTGTTTTTTAGACCGGACCAGGTTGGTATGACAAA 525
Query 488 GACTGATGCTGCTGTCCAGACCCTTGCAGAAATAAACCCTGACGTAGTACTTGAGAGTTT 547
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 526 GACTGATGCTGCTGTCCAAACCCTTGCAGAAATAAACCCTGACGTAGTTCTTGAAAGTTT 585
Query 548 CACAATGAACATAACAACAGTGAAAGGCTTTGAAACCTTCACGTCGAGCTTGACGAACAA 607
|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 586 CACAATGAACATAACAACAGTGCAAGGCTTTGAAACCTTCACGTCCAGCTTGACAAACAA 645
Query 608 GTCATTTTGTCCTACCAAGGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 667
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GTCATTTTGTCCTAGCAAAGAGGGCGGCAGTGGTGTGGATCTTGTTTTGAGTTGTGTCGA 705
Query 668 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TAACTATGAAGCAAGGATGGCTGTCAACCAGGCATGCAATGAGTTACGTCAAACATGGAT 765
Query 728 GGAGTCAGGTGTATCTGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 787
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAGTCAGGTGTATCCGAAGATGCTGTTTCAGGTCACATACAGCTCTTGGTTCCCGGAGA 825
Query 788 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 819
||||||||||||||||||||||||||||||||
Sbjct 826 AACTGCTTGTTTTGCTTGTGCACCTCCCCTGG 857
Score = 1003 bits (543), Expect = 0.0
Identities = 708/780 (91%), Gaps = 42/780 (5%)
Strand=Plus/Plus
Query 865 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAGCGGGAAGGGGTCTGTGCTGCAT 924
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 855 TGGTCGTGGCATCTGGAATTGATGAACGGACACTTAAACGGGAAGGGGTCTGTGCTGCAT 914
Query 925 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTCTGCCAACTACTATGGGTGTTGTTGCGGGGCTTTTGGTTCAAAACTCTCTCAAGTTCT 974
Query 985 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTACAATTCACTAAAGGATTTTTTCC 1044
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 975 TACTAAATTTTGGTGAAGTTTCTCCATACTTGGGTTATAATTCACTGAAGGATTTTTTCC 1034
Query 1045 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTACAGCGGCAGA 1104
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1035 CAACCATGAAAATGAGACCAAATCCACAATGCTCGAATGTAGCTTGTCTAGAGCGGCAGA 1094
Query 1105 AAGAATACATGCTTGCGAAACCAGAAAGGGACGCTGCTGCTAAAGCTAAGATGGAAGCTG 1164
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1095 AAGAATATATGCTTGCAAAACCAGAAAGGGATGCTGCTGCTAAAGCTAAGATGGAAGCTG 1154
Query 1165 ATGCATCCACAGCTATTGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1224
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 ATGCATCCACAACTATCGATGAAGGTCCACTCCATGATGATAATGAGTGGAACATAAGTG 1214
Query 1225 TTGTCGACGATGAAAATGAGACGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTGC 1284
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1215 TTGTCGATGATGAAAATGAGAAGGATACTACAAAAGCTGCCTCAAGTTCAGATACATTAC 1274
Query 1285 CTGAAGGGCTTACTCGGGAGCTCCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1344
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1275 CCGAAGGGCTTACTCGGGAGCTTCCAGTTGCAGATGAGTATGAGAAAGCAATAGCCATAG 1334
Query 1345 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 CCTCAGGGTCAGGAGAAACAGAGGAGGAAGATGACCTTGAAGATCTGAAGAAACAGCTCG 1394
Query 1405 AAGCTCTTAACGCTGCTTGAGTCTTT-T-------------T--T------AGCAAATTT 1442
||||||| |||||||||||||||||| | | | |||| ||||
Sbjct 1395 AAGCTCTCAACGCTGCTTGAGTCTTTATGAGGGAGAAAAAATAGTTGTTTTAGCATATTT 1454
Query 1443 ATACATGAAAGAGGCTACAAAGTGTA-T-GCaaaaaaaaaaa-aGTGT-TGGGG-TTGAT 1497
|||||||||||||||||||| ||| | | | | ||||| ||||| | || ||| |
Sbjct 1455 ATACATGAAAGAGGCTACAA-GTGCAATTGTGTATGCAAAAAGAGTGTGTTAGGATTGGT 1513
Query 1498 AAATTGGATCTCATGGACATATAAAC-TTTTTGGATGATGACTTCTCCCGtttttttttt 1556
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 1514 AAATTGGATCTCATGGACATATAAACGTTTTTG-ATGATGACTTCTCCCGTTTTTTTAGT 1572
Query 1557 cttttttACCAAAGACAAGaaaaaaaaaaaGATACAATTTTGAAGATGTTTCATGGTTTT 1616
| || ||||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 1573 -TGTT--ACCAAAGACAA-AAA--------GATACAATTTTGAAGATGTTTCATGGATTT 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5