BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470540
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05385.1 | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa ... 1068 0.0
> AT1G05385.1 | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa
protein-related | chr1:1582671-1583718 REVERSE LENGTH=746
Length=746
Score = 1068 bits (578), Expect = 0.0
Identities = 644/676 (95%), Gaps = 4/676 (1%)
Strand=Plus/Plus
Query 1 TTCTGAGGTTCTTGTTGTTATCAGACAGGAAGATTCATGGGTTTCCTTGTAGCTGCCATG 60
||||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 35 TTCTGAGGTTCCTGTTGTTATCAGACAGAAAGATTCATGGGTTTCCTTGTAGCCGTCATG 94
Query 61 AACTTTTCTCCTACCTTGATGCATCACCATATCAAATCGAAG-CATCAATGTCAAAATGA 119
|||||||||||||| ||| ||||||||||||| ||||||||| || ||||||||||||||
Sbjct 95 AACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCA-CAATGTCAAAATGA 153
Query 120 AAAGCTTCTTCAGGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 179
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 AAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 213
Query 180 TGTCGGTGCTTCTTCGCTT-ATGGCCGCATTTGAGTTTTCTGGAATACAAGCTCAGGCGG 238
||| |||||||||||| || |||||| || |||||||||||||| ||||||||||||||
Sbjct 214 TGTTGGTGCTTCTTCG-TTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGT 272
Query 239 CAGAGGAAAAGGTAGAAGAAGGACAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 298
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 273 CAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 332
Query 299 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACCTGAAATCTGCTAGAG 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 333 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAG 392
Query 359 AGGTTGTCAAAACCATGAGAGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTTA 418
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 393 AGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCA 452
Query 419 GAAGAAGTGCTGATGCTGCTAAAGAATCTATTCGTGATTATCTGAGCAATTGGAGAGGAC 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 453 GAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGAC 512
Query 479 AAAAGACTGTTGCTGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGAGCTTTGG 538
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 513 AAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGG 572
Query 539 CGAAATTTTACTCAAAGGCTGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 573 CGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 632
Query 599 TTTTGGATGATCTTAACAAGGCTGAAGAGTTCTTGTGACATTTTTGCTGTAACATGTTTC 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 633 TTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGACATTTTTGCTGTAACATGTTTC 692
Query 659 ACTCATGTTATATATA 674
|| ||||||||| |||
Sbjct 693 ACCCATGTTATACATA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5