BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470543
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05410.1 | Symbols: | Protein of unknown function (DUF1423)... 2536 0.0
AT1G05400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 84.2 4e-15
> AT1G05410.1 | Symbols: | Protein of unknown function (DUF1423)
| chr1:1585371-1587778 REVERSE LENGTH=1742
Length=1742
Score = 2536 bits (1373), Expect = 0.0
Identities = 1624/1738 (93%), Gaps = 46/1738 (3%)
Strand=Plus/Plus
Query 1 ACAATAATACTTTGGTTTCTCGGAGGTTCGAGTTCTTGTTCTTCCCAAGGCCGCTACTTC 60
||||||| ||||||||| ||| || |||||||||||||||||||||||||| |||||||
Sbjct 12 ACAATAAAACTTTGGTTCCTCCGAATTTCGAGTTCTTGTTCTTCCCAAGGCCCCTACTTC 71
Query 61 GGCCTTAGCTTCAACCA--------TT---G-T-C--GTTTTCATGGGCAAGAAAGAATG 105
|||| |||| ||||||| || | | | |||||||||| |||||||||| |
Sbjct 72 GGCCCTAGCATCAACCATTGTCGTTTTAAAGCTCCAGGTTTTCATGGCCAAGAAAGAA-G 130
Query 106 -AACCATCGTTGAGATCTTCTGCAATTAATCAGTCTCGAAGTCTCTGGAGATTGTCTTA- 163
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 131 TAACTATCGTTGAGATCTTCTGAAATTAATCAGTCTTGAAGTCTCTGGAGATTGTCTTAT 190
Query 164 AATCATGGACTCTATGGATATTGATCAAAGTAACAGAGGGGAATCGCCTCACCTTCTGCT 223
|| ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 191 AA-CATGGACTCCATGGATATTGATCAAAGTAACATAGGTGAATCGCCTCACCTTCTGCT 249
Query 224 GAGACCAGTAAGGCCAATGGAATCTGGTGAAGGTTTACCGTATGCTCCTGAGAATTGGCC 283
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 250 GAGACCAGTAAGTCCATTGGAATCTGGTGAAGGTTTACCTTATGCTCCTGAGAATTGGCC 309
Query 284 TAATCCCGGAGATACTTGGCATTGGAAGGCTGGACCGAGAGTTAGCGGTAAAGGCTACTT 343
|||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 310 TAATCCTGGAGATACTTGGCATTGGAAGGTTGGACCGAGAATTAGCGGTAAAGGCTACTT 369
Query 344 CGTGGATAGATACTTATATCCTCCTAAGTATCTTCCGGGTTTAGATACTGAAATATGGCG 403
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 370 CGTGGATAGATACTTATATCCTCCTAAGTATCTTCCCGGTTTAGATACTGAAATATTGCG 429
Query 404 GAAAAATAAAGTATTTAGGAGCAAGCTCTCACTCGAACGATACATTCGTGTTAC-CTTCC 462
||||||||| || |||||||||| |||||| ||| ||||||| ||||||| ||| |||||
Sbjct 430 GAAAAATAAGGTGTTTAGGAGCAGGCTCTCGCTCCAACGATATATTCGTG-TACACTTCC 488
Query 463 CTGAAGCGGATGTTCAAAAGTTCTTTGCTTCTTTCAGCTGGAGCATACCCTGTAGAGATG 522
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 489 CTGAAGCGGATGTTCAAAAGTTCTTTGCTTCTTTCAGCTGGAGCATACCCTGCAGAGATG 548
Query 523 GTCAAGATGTTTTGCCTCAGAAGCAGGTTCCGTTGCCAGTGTATAGCTCAGATGAGGATC 582
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 549 GTCAAGGTGTTTTGCCTCAGAAGCAGGTTCAGTTACCAGTGTATAGCTCAGATGAAGATC 608
Query 583 CAATGCATGATAATGGATCTGATACTGCGGTTTGTAAGGCTGGTAATGACAAATGTGGGA 642
|||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 609 CAATGCGTGATGATGGATCTGATACTGCGGTCTGTAAGGCTGGTAATGAAAAATGCCGGA 668
Query 643 GCCTGATGCCACAGTGTGAAGCCGAGACTTTACCTGCTATGCCTTGTGACATTTGCTGCG 702
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GCCTGATGCCACAGTGCGAAGCCGAGACTTTACCTGCTATGCCTTGTGACATTTGCTGCG 728
Query 703 GTGAACCTAATTTCTGC-TCTGATTGCTGTTGCATCCTTTGCTGCAAGTTAATAAGTTTA 761
|||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 729 GTGAACGTAAGTTCTGCGT-TGATTGCTGTTGCATCCTTTGCTGCAAGTTAATAAGTTTG 787
Query 762 GAGCATGAAGGTTATAGCTATATCAAATGTGAAGCTGTGGTTTCCGAGGGTCATATATGT 821
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 788 GAGCATGGAGGCTATAGCTATATCAAATGTGAAGCTGTGGTTTCCGAGGGTCACATATGT 847
Query 822 GGACATGTTGCTCATGTGAACTGTGCTCTTCGAGCTTA-CATGGCTGGAACCATTGGAGG 880
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 848 GGACATGTTGCTCATATGAACTGTGCTCTTCGAGCTTATC-TGGCTGGAACCATTGGAGG 906
Query 881 CAGCATCGGG-TTGGATGCTGAGTACTACTGCAGGCGATGTGACGCCAAAAAGGACTTGG 939
|||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 907 CAGCAT-GGGATTGGATACTGAATACTACTGCAGGCGATGTGACGCCAAAAAGGACTTGT 965
Query 940 TTCCACATGTCAACAAGTTTCTAGAAATATGTCAGACTGTAGAATATCAAGGCGACGTGG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TTCCACATGTCAACAAGTTTCTAGAAATATGTCAGACTGTAGAATATCAAGGCGACGTGG 1025
Query 1000 AGAAGATCCTGAATCTCGGTATTTGTATCCTGCAGGGCTCACAAAGAGACAATGCTAAGG 1059
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 1026 AGAAGATCCTGAATCTCGGTATTTGTATCTTGCGGGGAGCACAAAGAGACAATGCTAAGG 1085
Query 1060 AACTATTAAATTGTATCGAATCAACAGTCATCAAGCTTAAATGCGGCACGAGCTTGGAAG 1119
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1086 AGCTATTAAATTGTATCGAATCAACAGTCATCAAGCTTAAATGTGGCACGAGCTTGGAAG 1145
Query 1120 ATCTCTGGAATGATGATACACCAACTATATGGTCAGATTACTCCGACAATGGAGAAGCTA 1179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1146 ATCTCTGGAATGATGATACACCAACTATATGGTCAGATTACTCCGACAGTGGAGAAGCTA 1205
Query 1180 GAGACAATGATACATTGCAAAGTTTACAGGACGTGACTCCAATTGGACCCATACCATTCA 1239
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1206 GAGAAAATGATACATTGCAAAGTTTACAGGACGTGACTCCAATTGGGCCCATACCATTCA 1265
Query 1240 ACCATGAGGCTGAGATGCACAAACTCGAGGAAGAAATCGGCGAGGTTCTAAGAGCGCTGA 1299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1266 ACCATGAGGCTGAGATGCACAAACTCGAAGAAGAAATCGGCGAGGTTCTAAGAGCGCTGA 1325
Query 1300 GAAAGGCTCAGGAATTTGAGTACCAAATTGCAGAAGGCAAACTTCATGCTCAGAAAGAAT 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GAAAGGCTCAGGAATTTGAGTACCAAATTGCAGAAGGCAAACTTCATGCTCAGAAAGAAT 1385
Query 1360 GTCTGAGTGATCTGTATAGGCAACTCGAGAAGGAGAAGTCAGAGCTGTCGAGGCGAGTAT 1419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1386 GTCTGAGTGATCTGTATAGGCAGCTCGAGAAGGAGAAGTCAGAGCTGTCGAGGCGAGTAT 1445
Query 1420 CAGGTACAGATGTGAATAGCTTGATGACGAATGTGTTGAAGAGATTGGATCAGATTAGAA 1479
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 CAGGTACAGATGCGAATAGCTTGATGACGAATGTGCTGAAGAGATTGGATCAGATTAGAA 1505
Query 1480 AAGAAGTCACAAAGCTTAAAGAAATGGAAGAAGTAGCCAAGGGATTTGGTAGGACACCTA 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AAGAAGTCACAAAGCTTAAAGAAATGGAAGAAGTAGCCAAGGGATTTGGTAGGACACCTA 1565
Query 1540 GAGGAGTTCTTGAAGAGTACTTTCATCTAAGCATCGAGGACTAA--T---------CA-- 1586
|||| ||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1566 GAGGGGTTCTTGAAGAGTACTTTCATCTAAACATCGAGGACTAAGATTTATATAAGCACA 1625
Query 1587 T--A-A-TTGTACATTCGTTATGACGTTTGTTT-GCTAAGTTTTTGATTCTTCCTCGTAA 1641
| | | |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1626 TCCATAATTGTACATTCGTTATGACGTTTGTTTTG-TAAGTTTTTGATTCTTCCTCGTAA 1684
Query 1642 ATCTGAGTTTTGGATGATCATTTATTTATTCATTAATCAATTTACGAGTAACAAATGC 1699
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1685 ATCTGAGTTTTGGATGGTCATTTGTTTATTCATTAATCAATTTACGAGTAACAAATGC 1742
> AT1G05400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G06810.1);
Has 31 Blast hits to 31 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1584073-1585421
FORWARD LENGTH=996
Length=996
Score = 84.2 bits (45), Expect = 4e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1649 TTTTGGATGATCATTTATTTATTCATTAATCAATTTACGAGTAACAAATGC 1699
||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 996 TTTTGGATGGTCATTTGTTTATTCATTAATCAATTTACGAGTAACAAATGC 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83985511785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5