BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470544
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05430.1 | Symbols: | unknown protein; Has 31 Blast hits to... 1507 0.0
> AT1G05430.1 | Symbols: | unknown protein; Has 31 Blast hits
to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:1594057-1595818 REVERSE LENGTH=1067
Length=1067
Score = 1507 bits (816), Expect = 0.0
Identities = 935/992 (94%), Gaps = 9/992 (1%)
Strand=Plus/Plus
Query 25 GAACTACGATGGCTATGGCCGCTTTGAATCAGC-TTTTCTATGTCCTCGCGACAAAACCC 83
|||| |||||||||||||||||||| ||||||| |||| | |||||| || ||||||||
Sbjct 81 GAAC-ACGATGGCTATGGCCGCTTTAAATCAGCTTTTTGT-TGTCCTAGCCTCAAAACCC 138
Query 84 GAGCAGGAGAAGATAACGCCTGAAGAGTCTAGTGCTATTATCTCTTGCCATTACAAAGTT 143
|||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||| |
Sbjct 139 GAGCAGGAGAAGATCACGCCTGAAGAGTCTAGAGCTATTGTCTCTTGCCATTTCAAAGCT 198
Query 144 TTGTGGACTGCTGGTTTTGCGTCTGGTGTAGGGGGAGGTTTAACTTGGCAAGTTACAAAG 203
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 199 TTGTGGACAGCTGGTTTTGCGTCTGGTGTAGGGGGAGGTTTAACTTGGCAAGTGACAAAG 258
Query 204 AAGTTGAAAAAGCCGAAAGGACTTGAGAGGATTGCTCTTGCTA-CTGGAGTGGCTGCTGC 262
|||||||||||||||||||||||||||||| |||||||||| | ||||||| |||||| |
Sbjct 259 AAGTTGAAAAAGCCGAAAGGACTTGAGAGGGTTGCTCTTGC-AGCTGGAGTTGCTGCTTC 317
Query 263 GACTTTTGTTGTTGCTTGGAAACGGGCAAGTTCCAAAAATGCAGTTTCATGCCTAGATCA 322
||||||||||||||||||||| || ||||||||||| |||||||||||| ||| |||||
Sbjct 318 GACTTTTGTTGTTGCTTGGAATTGGTCAAGTTCCAAATATGCAGTTTCATCCCTTGATCA 377
Query 323 TATCCTTAGTCAAGATGCAACACGAATGCAGAAAGAGCTTGTCAATGTCTTAGTCAGGTC 382
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 378 TATCCTTAGTCAAGATGCTACACGAATGCAGAAAGAGCTTGTGAATGTCTTAGTCAGGTC 437
Query 383 CAATAGAGGTGAAGATTGGAGGTGGCAACTTATGTCCAAGCATTTTTACCCCGAATCTGT 442
||| |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 438 CAACAGAGGTGAAGCTTGGAGATGGCAACTTATGTCCAAGCATTTCTACCCTGAATCTGT 497
Query 443 TTATGGTGATGAAGGAGACAAACCTCAAATGCGTTGGCGTAGACGAACCACTTTCACCGA 502
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 498 TTACGGTGATGAAGGAGACAAACCTCAAATGCGTTGGCGTAGACGAACCACTTTCACTGA 557
Query 503 AATTGCCTCTTCTTATGATGATGTCAATGCAACCAAATCTCAGAGAAACCCCAATGGCTT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AATTGCCTCTTCTTATGATGATGTCAATGCAACCAAATCTCAGAGAAACCCCAATGGCTT 617
Query 563 ACCAAACCCTTCTCATCGAAGCATTTCCAATGGATCTGATGCTTCAAAGACTAAACCGAT 622
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 618 ACCAAACCCTTCTCATCGAAGAATTTCCGGTGGATCTGATGCTTCAAAGACTAAACAGAC 677
Query 623 GCTCCAAAATAGCCCTGGAAACTCGGATGGCGAAATGCCGGAAGAAGATGTTCTTGACAT 682
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 678 GCTCCAAAATAGCTCTGGAAACTCGGATGGCGAAATGGCGGAAGAAGATGTTCTTGACAT 737
Query 683 TGTATTTGGTGGTTCAGAACCAACAGAGAGCATTCCTGCGCCAGTTATTTCAAAGGTTGC 742
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 738 TGTATTTGGTTGTTCAGAAGCAACAGAGAGCATTCCTGCGCCAGTTATTTCAAAACTTGC 797
Query 743 TAGCAAAACGCAAACTCGCAAACAGAAAAGAGCTCAACGGAGACAGAGGCTTAAAAACCG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 TAGCAAAACGCAAACTCGCAAACAGAAAAGAGCTCAACGGAGACAGAGGCTTAAAAACCG 857
Query 803 TGAAGCTTCCACAAATACTCCTCAGTATGAACTTGCATAGAGAAAACAAAACAATTATGC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGAAGCTTCCACAAATACTCCTCAGTATGAACTTGCATAGAGAAAACAAAACAATTATGC 917
Query 863 TTCTTCTGCTTTATGTTTATCAC-CATGTATTTGTCTCTTTATCGATGGCTCCAAGTT-T 920
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |
Sbjct 918 TTCTTCTGCTTTATGTTTATCACACATGTATTTGTCTCTTTATCGATTGCTT-AAGTTCT 976
Query 921 CAATCCCAATTTGTCATTTTGAATCCCATTTTATGAAGGATGATTATGTAAGAATATTGT 980
| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 977 TATTCC-AATTTATCATTTTGAATCTCATTTTATGAAGGATGATTATGTAAGAATATTGT 1035
Query 981 TATTGAAGATGATAAGATCTTTTCATTGTACC 1012
||||||||||||||||||||||||||| ||||
Sbjct 1036 TATTGAAGATGATAAGATCTTTTCATTTTACC 1067
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 ACTTGTTCTTCGATTCGTTTCTGGGAACT 29
|||||||||||||||||||||||||||||
Sbjct 40 ACTTGTTCTTCGATTCGTTTCTGGGAACT 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5