BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470546
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05450.2 | Symbols: | Bifunctional inhibitor/lipid-transfer... 952 0.0
AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside trip... 80.5 2e-14
> AT1G05450.2 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:1599911-1601214
FORWARD LENGTH=839
Length=839
Score = 952 bits (515), Expect = 0.0
Identities = 683/759 (90%), Gaps = 32/759 (4%)
Strand=Plus/Plus
Query 1 AGTCTAAACACAAAAATGAACTCCAATATTTTCTTAATCTCAGCAGCCTTAATCTTCTCC 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 79 AGTCTAAACACAAAAATGAACTCCAATAGTTTCTTAATCTCAGCAGCCTTAATCTTCTCT 138
Query 61 CTAC--T-ATCAAATTCTCCAATATCGATTCTTGCTCAAATCAGTACTCCATGTTCACCA 117
|||| | |||||||||||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 139 CTACTATCATCAAATTCTCCAACATCGATTCTTGCTCAAATCAATACACCATGTTCACCA 198
Query 118 ACCATGCTCTCTAGCGTTACAGGGTGCATGAGTTTTCTAACGGGAGGTGGTAGTTCTCCG 177
| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 199 TCTATGCTCTCTAGCGTTACAGGTTGCACGAGTTTTCTAACGGGAGGTGGTAGTTTTCCG 258
Query 178 ACCTCAGATTGTTGTGGGGCTCTTAAATCCTTAACCGGAACCGGTATGGACTGTTTGTGT 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 259 ACCTCAGATTGTTGTGGGGCTCTTAAATCGTTAACCGGAACCGGTATGGACTGTTTGTGT 318
Query 238 CTGATAGTAACCGCAAGTGTTCCAATCAATATTCCTATAAACCGAACTCTAGCCATATCT 297
||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct 319 CTGATAGTAACCGCAGGTGTTCCAATCAGTATTCCTATAAACCGAACTTTAGCCATCTCT 378
Query 298 CTTCCTCGTGCATGTGGCATGCCCGGTGTCCCCGTTCAATGCAAAGCTTCTGCAGCACCT 357
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 379 CTCCCTCGTGCATGTGGCATTCCTGGTGTCCCCGTTCAATGCAAAGCTTCTGCAGCACCT 438
Query 358 CTTCCTGCCCCAGGTACTTCAGGTCCTGCGTCTTTCGGTCCGACCACTTCTCCTACAGAT 417
|| || | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CT-CC--C------TACTCCAGGTCCTGCGTCTTTCGGTCCGACCACTTCTCCTACAGAT 489
Query 418 TCACAAACTTCGGATCCTGAAGGGTCTGGTTCTTTCGGTCCACCTACTTCTCCGACAACT 477
|| |||||||| |||||||||||||||| ||||||| |||| || |||||||||||||||
Sbjct 490 TCGCAAACTTCTGATCCTGAAGGGTCTGCTTCTTTCCGTCCGCCCACTTCTCCGACAACT 549
Query 478 TCGCAAAATCCTAATGACCAGGAT-TACAGCGGATCGGGCAACGGAGGAGA-CACAATGG 535
||||||| |||||||||| ||||| | |||||||||||||||||||||||| | ||||||
Sbjct 550 TCGCAAACTCCTAATGACAAGGATCT-CAGCGGATCGGGCAACGGAGGAGATC-CAATGG 607
Query 536 GGTTTGGTCCACCACCTCCTTCAGCC-TCGTCTTCCTCTTCGCACTCTCTCAAGCTTTCA 594
|||||| |||||| || || || | | ||| ||||||||||||||||||||||||||||
Sbjct 608 GGTTTGCTCCACCTCCACCCTC-GTCGTCGCCTTCCTCTTCGCACTCTCTCAAGCTTTCG 666
Query 595 CGTCTTCTATTTGCTTTCGT-TTTAATGATTATCAAATTCATCTAATTAATTATAGAGCA 653
||||||||||||||||| |||| ||||||||||||||||||||||| | |||||
Sbjct 667 TATCTTCTATTTGCTTTCGCCTTTAC-GATTATCAAATTCATCTAATTAA--A--GAGCA 721
Query 654 ATTCCATAG-A-AAC-GA--T-CTTTACACTTTCATATTTTACCTGATTCTGGTTAAAAT 707
|| ||||| | || || | |||||| || |||||||||||||||||| ||||||||
Sbjct 722 ATACCATACTATAAAAGACGTTCTTTACG-TT-CATATTTTACCTGATTCTTGTTAAAAT 779
Query 708 AATGTTTTAAAGTTTTGTTGTATTTGATAGCCCTATTAA 746
||||||||| |||||||||||||||||||||||||||||
Sbjct 780 AATGTTTTAGAGTTTTGTTGTATTTGATAGCCCTATTAA 818
> AT1G05460.1 | Symbols: SDE3 | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:1601148-1605027
REVERSE LENGTH=3375
Length=3375
Score = 80.5 bits (43), Expect = 2e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 701 TTAAAATAATGTTTTAAAGTTTTGTTGTATTTGATAGCCCTATTAA 746
|||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3375 TTAAAATAATGTTTTAGAGTTTTGTTGTATTTGATAGCCCTATTAA 3330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5