BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470550
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, S... 2953 0.0
> AT1G05500.1 | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1,
SYT5 | Calcium-dependent lipid-binding (CaLB domain) family
protein | chr1:1624955-1629224 FORWARD LENGTH=2110
Length=2110
Score = 2953 bits (1599), Expect = 0.0
Identities = 1691/1736 (97%), Gaps = 4/1736 (0%)
Strand=Plus/Plus
Query 76 TACGGACATTGCAA-TTTTCGAAATCCGGCGA-TATAA-ATGGGTTTCATAGTCGGCGTT 132
|||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 106 TACGGACATTGCAATTTTTCTAAATCCGGCGATTA-AATATGGGTTTCATAGTCGGCGTT 164
Query 133 GTGATCGGACTCGTCGTCGGAGTCGCAATCATCATCGGCTTTGTCAAGTTGGAGAATTCT 192
|| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 165 GTAATCGGACTCCTCGTCGGAATCGCAATCATCATCGGCTTTGTCAAGTTGGAGAATTCT 224
Query 193 CGATCCAAGCTTCGCTCTGAACTTGCGAATACGGTGGCTGCTTTTGCGAGGATGACGGTG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CGATCCAAGCTTCGCTCTGAACTTGCGAATACGGTGGCTGCTTTTGCGAGGATGACGGTG 284
Query 253 GAGGATTCCAGGAAGCTTTTGCCTCCTGAGTTTTATCCTTCCTGGGTTGTCTTCTCCGAG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAGGATTCCAGGAAGCTTTTGCCTCCTGAGTTTTATCCTTCCTGGGTTGTCTTCTCCGAG 344
Query 313 CGTCAGAAGTTGACTTGGCTCAACCATCACTTGACAAAGATCTGGCCTTATGTTGATGAG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CGTCAGAAGTTGACTTGGCTCAACCATCACTTGACAAAGATCTGGCCTTATGTTGATGAG 404
Query 373 GCAGCCTCTGAGCTTATAAAGGCATCCGTGGAGCCTGTTCTCGAGCAATATAGACCTGCC 432
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 405 GCAGCCTCTGAGCTTATAAAGGCATCCGTGGAGCCTGTTCTTGAGCAATATAGACCTGCC 464
Query 433 ATAGTGGCCTCCTTAACGTTTTCTAAGCTTACTCTCGGTACAGTGGCGCCTCAATTTACA 492
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 465 ATTGTGGCCTCCTTAACATTTTCTAAGCTTACTCTCGGTACAGTGGCACCTCAATTTACA 524
Query 493 GGTGTTTCCATTATCGACGGTGATAAAAATGGGGTGACCATGGAACTTGATATGCAATGG 552
||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 525 GGTGTTTCCGTTATCGACGGTGATAAAAATGGGATTACCTTGGAACTTGATATGCAATGG 584
Query 553 GATGGAAATCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCTCTCCCAATT 612
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 585 GATGGAAACCCAAATATAGTACTTGGCGTCAAGACCTTAGTTGGTGTATCCCTCCCCATT 644
Query 613 CAGGTGAAAAATATTGGATTCACTGGTGTTTTCAGGCTGATTTTTAGGCCACTAGTTGAA 672
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 645 CAGGTGAAAAACATCGGATTCACTGGTGTTTTCAGGCTAATTTTTAGGCCACTAGTTGAG 704
Query 673 GACTTTCCTTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTC 732
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GACTTTCCCTGCTTTGGAGCTGTCAGCGTTTCTCTTAGAGAAAAGAAAAAATTGGACTTC 764
Query 733 ACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCCATTGAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 ACCCTTAAGGTTGTTGGAGGTGATATTTCAGCAATTCCTGGACTTTCTGAAGCTATTGAG 824
Query 793 GAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GAAACAATTCGGGATGCCGTGGAAGATTCTATCACATGGCCTGTTCGGAAGGTCATCCCA 884
Query 853 ATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTGGAGGTGAAG 912
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 885 ATTATACCTGGTGATTATAGCGATCTGGAGCTAAAGCCTGTTGGAATGTTAGAGGTGAAG 944
Query 913 CTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCT 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 CTTGTGCAAGCAAAGAACTTGACCAACAAAGATCTAGTTGGAAAATCAGACCCCTTTGCT 1004
Query 973 AAAATGTTTATACGCCCTTTGCGAGAAAAGACTAAAAGAAGCAAGACAATTAACAATGAC 1032
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1005 AAAATGTTTATACGCCCTTTGCGTGAAAAGACTAAAAGAAGCAAGACAATTAACAATGAC 1064
Query 1033 CTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTCGAAGACGCGTCAACTCAACAT 1092
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1065 CTGAATCCCATCTGGAATGAGCATTTTGAATTTGTTGTGGAAGACGCGTCAACTCAACAT 1124
Query 1093 TTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATCGGGTGTGCC 1152
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1125 TTAGTGGTCAGAATATATGATGACGAGGGTGTACAAGCATCTGAGCTTATTGGTTGTGCC 1184
Query 1153 CAAATCCGGCTTTGTGAACTCGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTC 1212
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CAAATCCGGCTTTGTGAACTTGAACCTGGTAAAGTGAAAGACGTCTGGTTGAAGCTGGTC 1244
Query 1213 AAAGATTTGGAGATCCAGAGAGATACCAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTT 1272
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1245 AAAGATTTGGAGATCCAGAGAGATACTAAGAACCGTGGAGAGGTTCACCTTGAGCTCCTT 1304
Query 1273 TACGTCCCTTATGGTTCGGGAAACGGCATCGTAAATCCCTTTGTCACTTCATCGATGACT 1332
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1305 TACATCCCTTATGGTTCGGGAAACGGCATTGTAAATCCCTTTGTCACTTCATCGATGACG 1364
Query 1333 TCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TCCTTAGAGAGGGTGCTCAAGAATGATACAACAGATGAAGAAAATGCATCAAGCCGTAAA 1424
Query 1393 AGAAAAGATGTCATTGTAAGAGGAGTGCTCTCTGTGACAGTGATATCTGCAGAAGAGATA 1452
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1425 AGAAAAGATGTCATTGTAAGAGGAGTTCTCTCTGTGACAGTGATATCTGCAGAAGAGATA 1484
Query 1453 CCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CCAATACAAGATCTGATGGGGAAAGCTGATCCATATGTTGTTCTCTCGATGAAGAAATCA 1544
Query 1513 GGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTTTGGAACCAGACT 1572
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1545 GGTGCCAAGAGCAAAACTCGGGTCGTCAATGACAGCTTGAACCCGGTATGGAACCAGACT 1604
Query 1573 TTTGATTTTGTAGTTGAAGACGGGTTACACGATATGCTAGTCCTTGAAGTCTGGGACCAC 1632
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1605 TTTGATTTTGTAGTTGAAGACGGGTTACATGATATGCTAGTCCTTGAAGTCTGGGACCAC 1664
Query 1633 GACACCTTTGGAAAGGACTACATTGGCAGATGTATCCTCACGTTGACAAGGGTTATAATG 1692
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1665 GACACCTTTGGAAAGGACTACATTGGGAGATGTATCCTCACGTTGACAAGGGTTATAATG 1724
Query 1693 GAAGAGGAATACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGTTG 1752
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1725 GAAGAGGAGTACAAAGACTGGTACCCATTAGACGAATCCAAAACGGGCAAGCTTCAGCTG 1784
Query 1753 CATCTCAAGTGGATGGCTCAATCAATTTATCGCGATTCCTAAGCTTAATGGGAAGA 1808
||||| |||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 1785 CATCTGAAGTGGATGGCTCAATCAATTTATCGTGATTCCTAAGCTTAATCGGTAGA 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96836851305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5