BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470551
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05510.1 | Symbols: | Protein of unknown function (DUF1264)... 1315 0.0
AT2G31985.1 | Symbols: | Protein of unknown function (DUF1264)... 604 3e-172
> AT1G05510.1 | Symbols: | Protein of unknown function (DUF1264)
| chr1:1629446-1630863 FORWARD LENGTH=980
Length=980
Score = 1315 bits (712), Expect = 0.0
Identities = 792/830 (95%), Gaps = 7/830 (1%)
Strand=Plus/Plus
Query 26 TTGCAGAGAAAAGAGAATTACAGTAATTGATTGGTGTAATGGAGAAGACAGTTCATTTAT 85
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 49 TTGCAGAGAAAAGAGAA-T----TAATTGATTGGTGTAATGGAGAAGGCAGTTCATTTAT 103
Query 86 CTACAAAAAATGGACCCAAGGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTG 145
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 CCACCAAAAATGGACCCAAGGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTG 163
Query 146 ACACGGCAGCTTCAGCCGTACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ACACGGCAGCTTCAGCCGTACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCT 223
Query 206 GCGCGTTTCATTTTTATGCATATGACATGACCCGACAAGTGGAGGCACACCATTTTTGCG 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 224 GCGCGTTTCATTTCTATGCATATGACATGACCCGACAAGTGGAGGCACACCATTTCTGTG 283
Query 266 GTCACATCAACGAAGACATGCGTCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTC 325
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 284 GTCACATCAACGAAGACATGCGCCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTC 343
Query 326 GTCTGATCGGTTTGGAGTACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGATGATG 385
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 344 GTCTGATCGGTCTGGAGTACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGACGATG 403
Query 386 AGAAGAAGCTTTGGCACACTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 AGAAGAAGCTTTGGCACACTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCG 463
Query 446 GTGTTCCAGAAGCTATTCAACGCCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAG 505
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 464 GTGTTCCCGAAGCTATTCAACGGCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAG 523
Query 506 TTTACCATTTCTGGCAAGTCGATAAGGGGCATGACCTTCCCATTGGCTTGCCTAATATCA 565
||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 524 TTTACCATTTCTGGCAAGTCGATTTGGGGCATCAGCTTCCCATTGGCTTGCCTAATATCA 583
Query 566 TGATGGCCGTTACTCGAGACGGTCAACTTTATCCGGAAATGATCAAGGAGACGGAAAAGC 625
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 584 TGATGGCTGTTACTCGAGACGGACAACTTTATCCGGAAATGATCAAGGAGACGGAAAAGC 643
Query 626 AGTTTGGAGTATCGATGGAAAAGGAAAGAGAGTCAAGGGCTTATATGAAGGGACCAGACC 685
| |||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||
Sbjct 644 AATTTGGAGTATCGATAGACAAGGAGCGAGAGTCAAGGGCTTATATGAAGGGTCCAGACC 703
Query 686 ATGGGATCCATCCCTTGGCAAATGGAGGAGGCAAAGGCCTCAAGCTGGAGGTGCGAGAGG 745
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 704 ATGGGATCCATCCCTTGGCAAATGGAGGAGGCAAAGGCCTGAAGTTGGAGTTGCGAGAGG 763
Query 746 TTGACATAAAGCCGGTCGAGTCCGTTCCAAGAGTCTTCGTTTAAGTTACAGTTAAATAGA 805
|||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 764 TTGACATAAAGCCGGTTGAGTCCGTTCCAAGAGTCTTCGTTTAAGTTATACTTAAATAGA 823
Query 806 CAACTTAAGAAAAGAATAAATAAAGAAGCGATCGAGCTTTGCTTTTGTAT 855
||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 824 CAACTTAAGAA--GAATAAATAAATAAGCGATCGAGCTTTTCTTTTGTAT 871
> AT2G31985.1 | Symbols: | Protein of unknown function (DUF1264)
| chr2:13613928-13615692 REVERSE LENGTH=957
Length=957
Score = 604 bits (327), Expect = 3e-172
Identities = 555/667 (83%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 105 GGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTGACACGGCAGCTTCAGCCGT 164
||||||||| ||| |||| ||||||||||||||||| ||||||| ||||| || || ||
Sbjct 115 GGTTCCAGGGGAGACAACAAAGACCGGAACCTCCATAATTGACACTGCAGCCTCCGCTGT 174
Query 165 ACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGTTTCATTTTTATGC 224
||||| || || ||| ||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 175 TCAAAGTTTTGCACCGGTTAACCAAATCCACCAACATCTCTGCGCGTTCCATTTCTATGC 234
Query 225 AT-ATGACATGACCCGACAAGTGGAGGCACACCATTTTTGCGGTCACATCAACGAAGACA 283
| | |||||| | |||||||| ||||| |||||||| ||| ||||| | |||||||| |
Sbjct 235 -TGACGACATGGCACGACAAGTAGAGGCTCACCATTTCTGCAGTCACGTGAACGAAGAGA 293
Query 284 TGCGTCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTCGTCTGATCGGTTTGGAGT 343
||||||||||| |||||||||||||||| ||||| ||||||||||| || || |||||||
Sbjct 294 TGCGTCAGTGTTTGATCTACGACGGTCCGGATGCAAACGCTCGTCTAATTGGATTGGAGT 353
Query 344 ACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGATGATGAGAAGAAGCTTTGGCACA 403
|||| ||| |||||||||| || ||||| |||||||| || ||||||||||||||||||
Sbjct 354 ACATAGTGTCAGAGAAGCTGTTCATGACTTTGCCTGACGAAGAGAAGAAGCTTTGGCACT 413
Query 404 CTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCGGTGTTCCAGAAGCTATTC 463
| |||||||||||||| |||||||| |||||||||||||| |||||||||| || ||||
Sbjct 414 CGCACGAGTGGGAAGTGAAAGGAGGGTTCTTGTTCATGCCTGGTGTTCCAGGTGCCATTC 473
Query 464 AACGCCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAGTTTACCATTTCTGGCAAG 523
| || ||||||| || |||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 474 AGCGTAAAGATCTTGATAAAGTCGCTAAGACTTATGGGAAAGTTTTCCATTTTTGGCAAG 533
Query 524 TCGATAAGGGGCATGACCTTCCCATTGGCTTGCCTAATATCATGATGGCCGTTACTCGAG 583
| ||| ||| ||||| ||||||||||| || |||||| |||||||||| ||||| || |
Sbjct 534 TTGATTTGGGCCATGAGCTTCCCATTGGTTTACCTAATGTCATGATGGCTGTTACACGCG 593
Query 584 ACGGTCAACTTTATCCG-GAAATGAT-CAAGGAGACGGAAAAGCAGTTTGGAGTATCGAT 641
| || || |||| ||| || ||||| || |||| | || |||| |||||| |||||| |
Sbjct 594 ATGGCCAGCTTT-TCCACGAGATGATTCA-GGAGGCAGAGAAGCGGTTTGGGGTATCGGT 651
Query 642 GGAAAAGGAAAGAGAGTCAAGGGCTTATATGAAGGGACCAGACCAT-GGGATCCATCCCT 700
|| ||| || || ||| |||| |||||| ||||| || | | ||||||||||| |
Sbjct 652 AGAGGGGGAGAGGGACTCACGGGCGTATATGTCTGGACCTGAGC-TCGGGATCCATCCAT 710
Query 701 TGGCAAATGGAGGAGGCAAAGGCCTCAAGCTGGAGGTGCGAGAGGTTGACATAAAGCCGG 760
|||| ||||||||||||||||| | || || ||| | |||||||| || || |||||||
Sbjct 711 TGGCGAATGGAGGAGGCAAAGGGATGAAACTAGAGCTACGAGAGGTCGATATCAAGCCGG 770
Query 761 TCGAGTC 767
| |||||
Sbjct 771 TTGAGTC 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5