BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470554
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05540.1 | Symbols: | Protein of unknown function (DUF295) ... 1812 0.0
> AT1G05540.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:1639286-1640811 FORWARD LENGTH=1270
Length=1270
Score = 1812 bits (981), Expect = 0.0
Identities = 1107/1169 (95%), Gaps = 4/1169 (0%)
Strand=Plus/Plus
Query 23 TGTGGTCACTTGAATAATAATGTCTCAGCTTCTCTTCCATCTCTCCAAACTCTCTTCCCG 82
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 44 TGTGGTCACTTGAATAATAATGTCTCAGCTTCTCTTCCGTCTCTCAAAACTCTCTTCCCG 103
Query 83 GAACAATGTGCTTATACACAAGAGCGTTCGCTTGTTTTCAACAAGCCCGTATTTGACACT 142
||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 104 GAATAATGAGCTTATACACAAGAGCGTTCGCTTGTTTTCAACCAGCCCGTATTTGACACT 163
Query 143 TGGCAGCGTTGGTGAAGACTTGCCGGGAGAAGGCGGCGGCTACATCGGAGATATCCTCTT 202
||||||||||| |||||||||||| | ||||| |||| ||||||||||||||||||||||
Sbjct 164 TGGCAGCGTTGTTGAAGACTTGCCTGAAGAAGACGGCAGCTACATCGGAGATATCCTCTT 223
Query 203 GTTCGATCCGGCCAAGGAAGAGTTAGTCACAGTCCGGGACAAAACAATACCTGAAGAGCT 262
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 224 GTTCGATCCGGCCAAGGAAGAGTTAGTCACAGTCCGGGACAAAACAATTCCCGAAAAGCT 283
Query 263 TATTAACTCAAAACTGGTCGGAGCTTCACATGGATGGACATTTTTCTCTGACCGATGCAA 322
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CGTTAACTCGAGAGTGGTCGGAGCTTCACATGGATGGACATTTTTCTCTGACCGATGCAA 343
Query 323 TCATAATTCTGTACGTATCAGCGACCTTTTTAATCCCCTGGCTTCCAAGTCAAACACCAA 382
||||||||||||| |||||||||||||||||| |||| |||||||||| |||||||| ||
Sbjct 344 TCATAATTCTGTATGTATCAGCGACCTTTTTACTCCCATGGCTTCCAAATCAAACACAAA 403
Query 383 GATAATTCCTCTGCCTCTGCTTACTACTATGATCTATGGCCAAACAGATGTTGTCTGGAA 442
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 404 GATAATTCCTCTGCCTCTGCTTACTACTATGATCTATGGCCAAACAGAAGCTGTCTGGAA 463
Query 443 CGTGGCAATGTCTTCATCTTCTCCTCACCAAGACAATGAGGAAGAAGACTGTGTAGTGGC 502
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 464 CGTGGCAATGTCGTCATCTTCTCCTCACCAAGACAATGAAGAAGAAGACTGTGTCGTGGC 523
Query 503 TATCAATTTCTTGGGTAACCAACTGAGTATGTGCAGGCCCGGTCGTGACCTCTGTTGGAC 562
||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||
Sbjct 524 TATCAATTTCTTGGGTAGCCAACTGAGTGTGTGCAGGCCCGGTCGTGACCACGGTTGGAC 583
Query 563 TAACAAACAAATCCCTTTCGTCTGCTCGGAAAACTCAAATCTTATGTACTCGAAGAGAGA 622
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TAACAAACAAATCCCTTTCATCTGCTCGGAAAACTCAAATCTTATGTACTCGAAGAGAGA 643
Query 623 TCAAAGGTTCTATTTGCCTGCTCCTGGAGGCAACTACTTGTGCTCTTATGATCTCCACTT 682
||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 644 TCAAAGGTTTTATTTGCCTGCTCCTGGAGGCAATTACTTGTGCTCTTGGGATCTCCACTT 703
Query 683 CGATAACGATCCTATGTTCAATGAGTTGGTGTTTCTGAACCTCCCTGAGTTGCCACAGTC 742
|||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 704 CGATAACGATCCTAAGTTCAATGAGTTGGTGTTTCTTAATCTCCCTGAGTTGCCACAGTC 763
Query 743 CGAGTGGGAGCTGTTGAATTCTTGTTTCAAGGAGGACCATTGGGTGGAGTCACCTTCCGG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CGAGTGGGAGCTGTTGAATTCTTGTTTCAAGGAGGACCATTGGGTGGAGTCACCTTCCGG 823
Query 803 CCAAAGTTTCTTAGTCAAATGGTACTCTCA-AGTCCCTTCTCAACGATACAAAGAGCCGA 861
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 824 CCAAAGTTTCTTAGTCAAATGGTACTCTCACA-TCCCTTCTCAACGATACAAAGATCCGA 882
Query 862 TATTGATGGTGTTTAGAGAGGATGAAGAAACAGAAGAGGGAACAAGAAACATGTGTTACA 921
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 883 TATTGATGGTGCTTAGAGAGGATGAAGAAACAGAAGAGGGAACAAGAAATATGTGTTACA 942
Query 922 CCGAGGACATTGGAGATCTTTGCATCTTCCTTTCAAAGAGTGATCCTTTCTGTGTTGTGG 981
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 943 CCGAGGACATTGGAGATCTTTGTATCTTCCTTTCAAAGAGTGATCCTTTCTGTGTTGTGG 1002
Query 982 CAAGCTCTTGCCCTGGTCTCAAACCTAACTCCATCTACTTGATGGGCCGTTGCTTTGCTG 1041
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1003 CAAGCTCTTGCCCTGGTCTCAAACCCAACTCCATCTACTTGATGGGCCGTTGCTTTGCTG 1062
Query 1042 TTTATGATCTCACCACCCGAACAGCCCATCACTTTAAA-CCTCCCAAAGATGGACCTGAA 1100
|||||||||||||||||||||| |||| |||||| ||| || ||||||| |||||| |||
Sbjct 1063 TTTATGATCTCACCACCCGAACCGCCCGTCACTTCAAAGCC-CCCAAAGGTGGACCAGAA 1121
Query 1101 AGGGTTCCTTTCCTCCCCTACTGGCTTCCTCCATTTTCTACCTAGTTCTTTGGTTGGTGT 1160
|| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||
Sbjct 1122 AGAGTTCCTTTCCTCCCTTATTGGCTTCCTCCATTTTCTATCTAGTTCTTTGGTTGGTGT 1181
Query 1161 TGGTTTTATATGCGGTGTGTTTCGAtttt 1189
| | ||||||| ||||||||||||||||
Sbjct 1182 TAATGTTATATGTGGTGTGTTTCGATTTT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5