BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470555
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05550.3 | Symbols: | Protein of unknown function (DUF295) ... 568 5e-161
> AT1G05550.3 | Symbols: | Protein of unknown function (DUF295)
| chr1:1640959-1643917 REVERSE LENGTH=1597
Length=1597
Score = 568 bits (307), Expect = 5e-161
Identities = 349/369 (95%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 142 CCCTTATTTGACACTTGGCACTAGGGTTAAGGAAGTTTTGCCAGG-CGGCTGCAAAACTG 200
||||||||||||||||||||||||||||||| || ||||||| || ||||||||||| ||
Sbjct 388 CCCTTATTTGACACTTGGCACTAGGGTTAAGAAAATTTTGCC-GGCCGGCTGCAAAATTG 446
Query 201 GAGATGTTCTTTTGTTTGACCCGACCAAAGAAGAGATAGTCACGGTCCCGGACAAAACAA 260
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 447 GAGATGTTCTTTTGTTTGACCCGACCAAGGAAGAGATAGTCACGGTCCCGGACAAAACAA 506
Query 261 TTCCCAAAGAGCTCATGGATGAAGAAATGATGGGAGCTTCCCATGGATGGGGAttttttt 320
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 507 TTCCCGAAGAGCTCATGGATGAAGAAATGATGGGAGCTTCCCATGGATGGGGATTTTTCT 566
Query 321 GTGACCGG-CGCGATCGTTCTGTTCGTATCAGCGACATTTACAATCCTTTGGCATCCAAA 379
|||||||| | |||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 567 GTGACCGGACT-GATCGTTCCGTACGTATCAGCGACATTTTCAATCCTTTGGCATCCAAA 625
Query 380 TCAAACCCTGTCATCATTCCTCTGCCTAGGCTTACGGCTCTGCCCACTGGCCAAACCGAA 439
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACAAACCCTGTCATGATTCCTCTGCCTAGGCTTACGGCTCTGCCCACTGGCCAAACCGAA 685
Query 440 GAAGTCTGTAACGTAGCAATGTCCTCCTCTTCTCCTCTTGGTGAGGAAGACTGTGTAGTG 499
|||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AAAGTTTTTAACGTAGCCATGTCCTCCTCTTCTCCTCTTGGTGAGGAAGACTGTGTAGTG 745
Query 500 GCTATCAAG 508
|||||||||
Sbjct 746 GCTATCAAG 754
Score = 429 bits (232), Expect = 2e-119
Identities = 276/298 (93%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 652 AGGAATCTACTACAAGACAAAGAGGTTGATGGTGTTTAGAGAGGAGGAGACGACGGAAGG 711
|||||||||| |||| |||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 1030 AGGAATCTACCACAAAACAAAGGGGTTGATGGTTTTTAGAGAAGAGGAGACGACGGAAGG 1089
Query 712 AAAGATTATGTGTTACACAGAGGACATTGGAGACATGTGCATTTTCCTTGCAAACAACGA 771
||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1090 AAAAATTATGTGTTACACCGAGGACATTGGAGACATGTGCATTTTCCTTGCAAGCAACGA 1149
Query 772 GGCTTTCTGCATCCCGGCTAGCTCATGCCTTGGCCTCAAGCCTAACTCCATCTATTTTAT 831
||||||||| |||||||||||||| ||||| |||||||||||||||| | |||||| |||
Sbjct 1150 GGCTTTCTGTATCCCGGCTAGCTCCTGCCTCGGCCTCAAGCCTAACTGCGTCTATTATAT 1209
Query 832 GGGACGTGGCTTAGGTATTTACGATCTCACTACCGGTGAGGCACATCATTATAAAGCTCC 891
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1210 GGGACGTGGCTTTGGTTTTTACGATCTCACTACCGGAGAGGCACATCATTATAAAGCTCC 1269
Query 892 CAAAGGTGCACCCAGCGTTCTCACCACCCCTTACTGGCTTCCTCCATTTTCTATCTAG 949
|||||||||||| |||| ||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 1270 CAAAGGTGCACCAAGCGCTCTGACCGCCCCTTACTGGCTTCCTCCATTTGCTATCTAG 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5