BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470558
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05577.1 | Symbols: | Domain of unknown function (DUF966) |... 2091 0.0
> AT1G05577.1 | Symbols: | Domain of unknown function (DUF966)
| chr1:1662370-1664398 REVERSE LENGTH=1502
Length=1502
Score = 2091 bits (1132), Expect = 0.0
Identities = 1290/1363 (95%), Gaps = 24/1363 (2%)
Strand=Plus/Plus
Query 1 GAAAACTCTTTTAGAGTTTTGAAAAATCTAAGTAGCTTTGGCTTATATAAGTTCTTTTGT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAACTCTTTGAGAGTTTTGAAAAATCTAAGTAGCTTTGGCTTATATAAGTTCTTTTGT 60
Query 61 AAAAG--ACACAGAGAATAAAATTGAAGACCaaaaaaaaaaagagagaaagagagatgga 118
||||| |||||||||||||||| ||||||| |||| ||| | |||||||||||||||
Sbjct 61 AAAAGACACACAGAGAATAAAATCGAAGACC---AAAACAAA-A-AGAAAGAGAGATGGA 115
Query 119 aagtaatggtggaggaggagaagtaagaagagTGAATTTAGTTTATTTCCTTAGCCGTTC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 AAGTAATGGTGGAGGAGGAGAAGTAAGAAGAGTGAATTTAGTTTATTTCCTTAGCCGTTC 175
Query 179 GGGTCACGTTGACCATCCTCATCTCTTGCGTGTTCATCATCTCTCTCGTAATGGAGTCTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GGGTCACGTTGACCATCCTCATCTCTTGCGTGTTCATCATCTCTCTCGTAATGGAGTCTT 235
Query 239 TCTACGAGATGTGAAAAAATGGTTAGCGGACGCACGAGGCGATGCGATGCCTGACGCATT 298
||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 236 TCTCCGAGATGTGAAGAAATGGTTAGCAGACGCACGAGGCGATGCCATGCCTGATGCATT 295
Query 299 TTGTTGGTCTTGTAAGAGGAGGTATAAGAATGGTTATGTATGGCAAGATTTATTGGACGA 358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTCTTGGTCTTGTAAGAGGAGGTATAAGAATGGTTATGTATGGCAAGATTTATTGGACGA 355
Query 359 TGATCTTATTACTCCTATCTCTGATAATGAATATGTCCTCAAAGGATCTGAGATTCTTCT 418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGATCTTATCACTCCTATCTCTGATAATGAATATGTCCTCAAAGGATCTGAGATTCTTCT 415
Query 419 AAGCTCTCCAAAAGAGGATTCTCCTTACGTGGAGAAGAAAGCTTGGGTGACACGAAACGG 478
|||||||||||| ||||||| |||| | |||||||||||||||||||||||| |||||
Sbjct 416 AAGCTCTCCAAAGGAGGATTATCCTAATGTGGAGAAGAAAGCTTGGGTGACAAGAAAC-- 473
Query 479 TGGTGTCGGCGGAACAGACGCTGAAGAAAAACTCCAGAAGTCGAAACTAAGGTCGGAGAA 538
| || |||| |||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 474 --G-GT----GGAATAGACGCTGAAGAAAAACTCCAGAAGTTGAAACTAACGTCAGAGAA 526
Query 539 GATCCAAAAAGAGTCTCCGGTCTTCTGCTCACAGAGATCGACGGCAACAACGTCGACAGT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GATCCAAAAAGAGTCTCCGGTCTTCTGCTCACAGAGATCGACGGCAACAACGTCGACAGT 586
Query 599 CACGGAGGAATCCACCACGAACGAAGAAGGTTTCGTTCTTAAGAAACAAGATCCGAAAAA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CACGGAGGAATCCACCACGAACGAAGAAGGTTTCGTTCTTAAGAAACAAGATCCGAAAAC 646
Query 659 AGTCTCCGGCCAAAGAGATGGTTCGACGGAAAACGGGTCGGGTAACGACGTGGAGTCTGG 718
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 647 AGTCTCCGGCCAGAGAGACGGTTCGACGGAGAACGGGTCGGGTAACGATGTGGAGTCGGG 706
Query 719 TCGACCGAGTGTATCATCGACGACGTCGTCTTCGAGTTACATCAAGAGTGAGAGATATTC 778
|||||| |||||||| || |||||||||||||||||||| ||||||| | |||| |||||
Sbjct 707 TCGACCAAGTGTATCGTCTACGACGTCGTCTTCGAGTTATATCAAGAATAAGAGCTATTC 766
Query 779 AAGCGTACGTGCCTCTCACGTGTTACGGAACTTGATGAAGTGTGGTGGTTTGGATACAAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 767 GAGCGTACGTGCCTCTCACGTGTTACGGAACTTGATGAAGTGTGGTGGTTTGGACACAAA 826
Query 839 CGATGCCGTATTGGTGCCTTTGAATAAGTCTAGGTCTGGGGTTTTTGGTCCGGCTTGGGA 898
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 CGACGCCGTATTGGTGCCTTTGAATAAGTCTAGGTCTGGGGCTTTTGGTCCGGCTTGGGA 886
Query 899 AGATGAACGCAGATACCAATACCACCAACAGCACAATGCTCGAAAAAGCTTTGAAGGAGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 887 AGATGAACGCAGATACCAATACCACCAACAGCACAATGCTCGAAAAAGCTTCGAAGGAGC 946
Query 959 ATGGAGTGGCATAAAGATGAAAGAGACAATTGAGTTTTGTAAACCAAAGGTTGCTTCAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 947 ATGGAGTGGCATAAAGATGAAAGAGACAATTGAGTTTTGTAAACCAAAGGTTGCTCCAAG 1006
Query 1019 CAAGCCTTCCATGGCTCCATTATGCTCGCAATGTGGGAAGATGTTCAAACCTGAGAAGAT 1078
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1007 CAAGCCTTCCATGGCTCCATTATGCTCGCAATGTGGGAAGTTGTTCAAACCTGAGAAGAT 1066
Query 1079 GCATTCACACATGAAATTATGTCGAGGGATGAAGAATTCATCGGCGAATAATGATTTGAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 GCATTCACACATGAAATTATGTCGAGGGATGAAGAATTCATCGGCGAATAATGATTTGAT 1126
Query 1139 GACAGGCAATAATACCGGTAAACCGAGGCAGC---GGTGCAGAAACATTCCTGGAAATCC 1195
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1127 GACAAGCAATAATACCGTTAAACCGAGGCAGCAACGGTGCAGAAACATTCCTGGAAATCC 1186
Query 1196 ATTGGGACATCAACGTGTATTGAGGACTACTCTCAAAGAGTGATAAATGCGGAAAAAATT 1255
||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 1187 ATTGGGACATCAACGTGTATTGACGACTACTCTCAAAGAGTGATAAC-GCGGAAAATCT- 1244
Query 1256 GTTTGCTAGTTCAGTGAAATTCTGTTTGAATACCATGGAGCTTGATTTTTAGTCAGAAAG 1315
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1245 GTTTGCTAGTTC-GTGAAATTCTGTTTGAATACCATGGAGCTTGACTTTAAGTCAGAAAG 1303
Query 1316 TGGATTTGGATCATCTAAA--TTGACAATTTGAATATTGCTGT 1356
|| |||||||||||||||| |||||||||||||||||| |||
Sbjct 1304 TGCATTTGGATCATCTAAAAATTGACAATTTGAATATTGATGT 1346
Score = 122 bits (66), Expect = 7e-27
Identities = 73/76 (96%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 1357 aaaaaaaCGTGTTTAATAAACAAAACGTATCTCATGACAACATGTTCTTTGTCGTTTTGT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1374 AAAAAAACGTGTTTAATAAACAAAACGTATCTCATGACAACATGTTCTTTGTCTTTTTGT 1433
Query 1417 TTCCGAT-GATAGAAT 1431
||||||| | ||||||
Sbjct 1434 TTCCGATTG-TAGAAT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5