BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470561
Length=1921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05590.1 | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2 | ... 3016 0.0
> AT1G05590.1 | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2
| chr1:1669350-1671876 FORWARD LENGTH=2131
Length=2131
Score = 3016 bits (1633), Expect = 0.0
Identities = 1822/1912 (95%), Gaps = 18/1912 (1%)
Strand=Plus/Plus
Query 23 GCTTCCGTGAATGACAAATTACTACTTTTAAGGGATTGA-TTCAAGAACAAACCATGCTT 81
|||||||||||||||||||| ||| | ||| ||||||| ||||||||||| ||||||
Sbjct 146 GCTTCCGTGAATGACAAATTGCTAAATCTAA-GGATTGATTTCAAGAACAAGTCATGCTA 204
Query 82 ACTCTTTCCGAGTTTCATGTG--A-T-A--CCTTTACTCTTCTTCATTACGCTTCTTTCG 135
||||||||| ||||||||||| | | | || ||||||||||||||||||||||||||
Sbjct 205 ACTCTTTCCAAGTTTCATGTGATACTAATCCCAATACTCTTCTTCATTACGCTTCTTTCG 264
Query 136 CCATTGCTCTCCACTGCTATACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 195
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 265 CCATTGTTCTCCATTGCTCTACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 324
Query 196 CCTCAACATAAAGCCATTGCCCTCTCTCCAAATTTCACCATCCTTGCCCCTGAACACCAA 255
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 325 CCTCAACATAAAGCCATTGCACTCTCTCCAAATTTCACTATCCTTGCCCCTGAACACCAA 384
Query 256 TACCTCTCTGCCTCTGTAACACGTTATCTCAACCTGATCCGCTCTGAGAATTACTCGCCT 315
||||| || |||||||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 385 TACCTTTCGGCCTCTGTAACACGGTATCACAACCTGATCCGTTCTGAGAATTACTCGCCT 444
Query 316 CTCATTAACCATCCTGTCAAACTTACGAAAGGTTACACCTTGAGGAACCTTGTAGTCACT 375
||||||| | ||||||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 445 CTCATTAGCTATCCTGTCAAACTTATGAAAAGATACACCTTGAGGAACCTTGTAGTCACT 504
Query 376 GTTACCGATCTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAACCTCTCCATC 435
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 505 GTTACCGATTTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAAACTCTCCATC 564
Query 436 CCCATTGGCAGCGTT-TCCGCGCACTTGTTGGCTCATTCGGCTTGGGGAGCTATGCGTGG 494
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 565 CCCATTGGCAGC-TTCTCCGCGCACTTGTTAGCTCATTCGGCTTGGGGAGCTATGCGTGG 623
Query 495 CCTTGAGACATTTTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCAGTTGG 554
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 624 CCTTGAGACATTCTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCCGTTGG 683
Query 555 AATTTCTATTCAGGATTCTCCTTTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCAAG 614
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 684 AATTTATATTCAGGATTCTCCTCTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCGAG 743
Query 615 GAATTACTATGGAGTAGATGATATAATGAGGACAATTAAGGCCATGAGTGCAAACAAACT 674
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 744 GAATTACTATGGAGTAGATGATATAATGAGGACTATTAAGGCCATGAGTGCAAACAAACT 803
Query 675 CAATGTGTTCCATTGGCATATTACTGATTCACAATCTTTTCCATTAGTGCTTCCTTCCGA 734
||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||
Sbjct 804 CAATGTGTTCCATTGGCATATCACTGATTCACAATCTTTTCCACTGGTGCTTCCTTCTGA 863
Query 735 ACCTTCACTCGCTGCAAAGGGATCT-TATGGACCAGACATGGTATACACTCCCGAGGATG 793
||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 864 ACCTTCACTTGCTGCAAAAGGATCTCT-TGGACCAGACATGGTATACACTCCCGAGGATG 922
Query 794 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 982
Query 854 CTCCTGGCCATACAGGATCATGGGGAGAAGCGTACCCGGAAATTGTGACATGTGCCAATA 913
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 983 CTCCTGGTCATACAGGATCATGGGGAGAAGCTTACCCGGAAATTGTGACATGTGCCAATA 1042
Query 914 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGACGAGCGGTTAGCTAGTGAACCTGGGACTG 973
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1043 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGAAGAGCGGTTAGCTAGTGAACCTGGGACTG 1102
Query 974 GTCAGCTTAATCCC-TTGAGTGCTAAAACATATGAAGTTGTTAAAAACGTCATAGAAGAT 1032
|||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1103 GTCAGCTTAA-CCCTTTGAGTCCTAAAACATATGAAGTTGTTAAAAACGTCATACAAGAT 1161
Query 1033 GTCGTTAAGCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1092
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 ATCGTTAATCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1221
Query 1093 TGTTGGAAAACCGATCCTGCAATCATTTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1152
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1222 TGTTGGAAAACCGATCCTGCCATCAATTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1281
Query 1153 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1341
Query 1213 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGTGGATCCATCAT-TTCTACC 1271
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||
Sbjct 1342 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGCGGATCCATC-TGTTCTTCC 1400
Query 1272 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCTGCGAATACAAAGAGAATCGT 1331
||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 1401 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCGGAGAACACAAAGAGAATCGT 1460
Query 1332 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1520
Query 1392 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGCAAGGAAGCGGTGGCGGCTCTTG 1451
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 1521 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGAAAGAAAGCGGTGGCGGGTCTTG 1580
Query 1452 GTGTGCACCATTCAAGACGTGGCAGAGCATATACAACTATGATATAACCGATGGTTTGCT 1511
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1581 GTGTGCACCATTTAAGACGTGGCAGAGCATATACAACTATGATATAGCTGATGGTTTGCT 1640
Query 1512 CGATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCGTTGTGGTCAGAGCAAGC 1571
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1641 CAATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCATTGTGGTCAGAGCAAGC 1700
Query 1572 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTTGCGGAGAGCTT 1631
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1701 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTGGCGGAGAGCTT 1760
Query 1632 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGGTT 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1761 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGTTT 1820
Query 1692 AAACCTGTGGAGGTATAGGATGGTGAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1751
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1821 AAACCTGTGGAGGTATAGGATGGTTAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1880
Query 1752 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1940
Query 1812 AAAAGAGAAAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCAGAAACATGCTCTTGATCA 1871
|||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1941 AAAACAGATAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCATAAACATGCTCTTGATCA 2000
Query 1872 GGCTCTTTTGATTGTTGTA--CTTTGTTTGTTTTGTAGTTGTGGGTTGTAAT 1921
||||||||||||||||||| | | |||| |||||||||||||||||||||
Sbjct 2001 GGCTCTTTTGATTGTTGTATACATACTTTGCTTTGTAGTTGTGGGTTGTAAT 2052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95130032775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5