BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470561 Length=1921 Score E Sequences producing significant alignments: (Bits) Value AT1G05590.1 | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2 | ... 3016 0.0 > AT1G05590.1 | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2 | chr1:1669350-1671876 FORWARD LENGTH=2131 Length=2131 Score = 3016 bits (1633), Expect = 0.0 Identities = 1822/1912 (95%), Gaps = 18/1912 (1%) Strand=Plus/Plus Query 23 GCTTCCGTGAATGACAAATTACTACTTTTAAGGGATTGA-TTCAAGAACAAACCATGCTT 81 |||||||||||||||||||| ||| | ||| ||||||| ||||||||||| |||||| Sbjct 146 GCTTCCGTGAATGACAAATTGCTAAATCTAA-GGATTGATTTCAAGAACAAGTCATGCTA 204 Query 82 ACTCTTTCCGAGTTTCATGTG--A-T-A--CCTTTACTCTTCTTCATTACGCTTCTTTCG 135 ||||||||| ||||||||||| | | | || |||||||||||||||||||||||||| Sbjct 205 ACTCTTTCCAAGTTTCATGTGATACTAATCCCAATACTCTTCTTCATTACGCTTCTTTCG 264 Query 136 CCATTGCTCTCCACTGCTATACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 195 |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 265 CCATTGTTCTCCATTGCTCTACCTATCAACATTTGGCCAAAGCCGAGATTTCTCTCATGG 324 Query 196 CCTCAACATAAAGCCATTGCCCTCTCTCCAAATTTCACCATCCTTGCCCCTGAACACCAA 255 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 325 CCTCAACATAAAGCCATTGCACTCTCTCCAAATTTCACTATCCTTGCCCCTGAACACCAA 384 Query 256 TACCTCTCTGCCTCTGTAACACGTTATCTCAACCTGATCCGCTCTGAGAATTACTCGCCT 315 ||||| || |||||||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 385 TACCTTTCGGCCTCTGTAACACGGTATCACAACCTGATCCGTTCTGAGAATTACTCGCCT 444 Query 316 CTCATTAACCATCCTGTCAAACTTACGAAAGGTTACACCTTGAGGAACCTTGTAGTCACT 375 ||||||| | ||||||||||||||| |||| | ||||||||||||||||||||||||||| Sbjct 445 CTCATTAGCTATCCTGTCAAACTTATGAAAAGATACACCTTGAGGAACCTTGTAGTCACT 504 Query 376 GTTACCGATCTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAACCTCTCCATC 435 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 505 GTTACCGATTTTTCTCTTCCGCTTCACCACGGTGTTGATGAGTCTTACAAACTCTCCATC 564 Query 436 CCCATTGGCAGCGTT-TCCGCGCACTTGTTGGCTCATTCGGCTTGGGGAGCTATGCGTGG 494 |||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 565 CCCATTGGCAGC-TTCTCCGCGCACTTGTTAGCTCATTCGGCTTGGGGAGCTATGCGTGG 623 Query 495 CCTTGAGACATTTTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCAGTTGG 554 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 624 CCTTGAGACATTCTCTCAGATGATTTGGGGAACATCTCCTGATTTGTGCTTACCCGTTGG 683 Query 555 AATTTCTATTCAGGATTCTCCTTTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCAAG 614 ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 684 AATTTATATTCAGGATTCTCCTCTGTTTGGCCATAGAGGTGTTTTGCTCGATACATCGAG 743 Query 615 GAATTACTATGGAGTAGATGATATAATGAGGACAATTAAGGCCATGAGTGCAAACAAACT 674 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 744 GAATTACTATGGAGTAGATGATATAATGAGGACTATTAAGGCCATGAGTGCAAACAAACT 803 Query 675 CAATGTGTTCCATTGGCATATTACTGATTCACAATCTTTTCCATTAGTGCTTCCTTCCGA 734 ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| || Sbjct 804 CAATGTGTTCCATTGGCATATCACTGATTCACAATCTTTTCCACTGGTGCTTCCTTCTGA 863 Query 735 ACCTTCACTCGCTGCAAAGGGATCT-TATGGACCAGACATGGTATACACTCCCGAGGATG 793 ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct 864 ACCTTCACTTGCTGCAAAAGGATCTCT-TGGACCAGACATGGTATACACTCCCGAGGATG 922 Query 794 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 923 TCTCAAAGATTGTTCAGTATGGTTTTGAGCATGGTGTTAGAGTACTTCCTGAAATAGACA 982 Query 854 CTCCTGGCCATACAGGATCATGGGGAGAAGCGTACCCGGAAATTGTGACATGTGCCAATA 913 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 983 CTCCTGGTCATACAGGATCATGGGGAGAAGCTTACCCGGAAATTGTGACATGTGCCAATA 1042 Query 914 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGACGAGCGGTTAGCTAGTGAACCTGGGACTG 973 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1043 TGTTCTGGTGGCCTGCTGGAAAAAGTTGGGAAGAGCGGTTAGCTAGTGAACCTGGGACTG 1102 Query 974 GTCAGCTTAATCCC-TTGAGTGCTAAAACATATGAAGTTGTTAAAAACGTCATAGAAGAT 1032 |||||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1103 GTCAGCTTAA-CCCTTTGAGTCCTAAAACATATGAAGTTGTTAAAAACGTCATACAAGAT 1161 Query 1033 GTCGTTAAGCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1092 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 ATCGTTAATCAATTTCCAGAATCTTTCTTTCATGGAGGTGGAGATGAAGTTATCCCAGGC 1221 Query 1093 TGTTGGAAAACCGATCCTGCAATCATTTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1152 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1222 TGTTGGAAAACCGATCCTGCCATCAATTCTTTCTTGTCCTCTGGTGGAACACTAAGCCAG 1281 Query 1153 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 CTTCTTGAAAAGTACATAAACTCGACATTACCTTACATCGTGTCACAGAACCGCACAGTT 1341 Query 1213 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGTGGATCCATCAT-TTCTACC 1271 |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || Sbjct 1342 GTTTACTGGGAAGATGTTCTGTTGGATGCACAAATCAAGGCGGATCCATC-TGTTCTTCC 1400 Query 1272 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCTGCGAATACAAAGAGAATCGT 1331 ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| Sbjct 1401 TAAAGAGCACACAATCTTACAGACTTGGAATAACGGTCCGGAGAACACAAAGAGAATCGT 1460 Query 1332 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1461 AGCTGCTGGTTACAGAGTAATTGTCTCTTCATCAGAGTTCTACTACTTAGACTGTGGTCA 1520 Query 1392 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGCAAGGAAGCGGTGGCGGCTCTTG 1451 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| Sbjct 1521 CGGCGGGTTTCTAGGGAATGATAGTATATATGATCAGAAAGAAAGCGGTGGCGGGTCTTG 1580 Query 1452 GTGTGCACCATTCAAGACGTGGCAGAGCATATACAACTATGATATAACCGATGGTTTGCT 1511 |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1581 GTGTGCACCATTTAAGACGTGGCAGAGCATATACAACTATGATATAGCTGATGGTTTGCT 1640 Query 1512 CGATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCGTTGTGGTCAGAGCAAGC 1571 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1641 CAATGAGGAAGAGAGGAAGCTGGTGCTAGGAGGAGAGGTTGCATTGTGGTCAGAGCAAGC 1700 Query 1572 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTTGCGGAGAGCTT 1631 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1701 TGACTCGACGGTTTTAGACTCACGTCTTTGGCCACGTGCCTCTGCGTTGGCGGAGAGCTT 1760 Query 1632 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGGTT 1691 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1761 GTGGTCAGGGAATAGAGACGAGAGAGGTGTTAAGAGATGTGGTGAAGCCGTGGACCGTTT 1820 Query 1692 AAACCTGTGGAGGTATAGGATGGTGAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1751 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1821 AAACCTGTGGAGGTATAGGATGGTTAAGAGAGGGATTGGAGCTGAACCTATCCAACCATT 1880 Query 1752 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1881 GTGGTGTTTGAAGAATCCTGGAATGTGTAATACAGTCCATGGTGCTCTTCAAGATCAATA 1940 Query 1812 AAAAGAGAAAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCAGAAACATGCTCTTGATCA 1871 |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1941 AAAACAGATAGTTTCGAAATTGGATCCGAGTCAAAGAAAGCATAAACATGCTCTTGATCA 2000 Query 1872 GGCTCTTTTGATTGTTGTA--CTTTGTTTGTTTTGTAGTTGTGGGTTGTAAT 1921 ||||||||||||||||||| | | |||| ||||||||||||||||||||| Sbjct 2001 GGCTCTTTTGATTGTTGTATACATACTTTGCTTTGTAGTTGTGGGTTGTAAT 2052 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95130032775 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5