BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470562
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2473 0.0
> AT1G05600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1672099-1673748 FORWARD LENGTH=1650
Length=1650
Score = 2473 bits (1339), Expect = 0.0
Identities = 1465/1527 (96%), Gaps = 3/1527 (0%)
Strand=Plus/Plus
Query 29 GAGTTGTCATGA--G-TGTTAGATGGCCAAGAGTTCTAACGCCAAGTCTTCTTTCTCAAA 85
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 GAGTTATCATGAGTGTTGTTAGATGGCCAAGAGTTCTAACGCCAAGTCTTCTTTCTCAAA 114
Query 86 TCCTAAAGAAGCAGAAGAATCCAGTGACCGCACTTAAACTCTTTGAGGAAGCGAAAGTGA 145
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||
Sbjct 115 TCCTAAAGAAGCAGAAGAATCCAGTGACAGCACTTAAGCTTTTTGAGGAAGCGAAAGAGA 174
Query 146 GGTTTCCGAGTTACGGTCACAATGGCACGGTGTATGCCACCATGATTGACATCCTCGGTA 205
|||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 175 GGTTTCCGAGTTACGGTCACAATGGCTCGGTGTATGCTACCATGATTGACATTCTCGGTA 234
Query 206 ATTCTAACCGTGTGTTGGAAATGAAATATGTCATTGAGAGAATGAAGGGTGATTCTTGTG 265
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 235 AATCTAACCGTGTGTTGGAAATGAAATATGTCATTGAGAGAATGAAGGAAGATTCTTGTG 294
Query 266 AATGTAAAGATTCGGTTTTTGCATCGGCTATTCGTACATTCTCCAGAGCTGGAAGGCTGG 325
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 295 AATGTAAAGATTCGGTTTTTGCATCGGTTATTCGTACATTCTCCAGAGCTGGAAGGCTGG 354
Query 326 ATGATGCCATTTCTCTCTTCAAGAGCCTTCATGAGTTCAATTGTGTGAATTGGACTCTAT 385
| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 355 AAGATGCTATTTCTCTCTTCAAGAGCCTTCATGAGTTCAATTGTGTGAATTGGAGTCTAT 414
Query 386 CTTTTGATACTCTTTTACAGGAGATGGTTAAAGAATCAGAGCTCGAAGCTGCTTGTCATA 445
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 CTTTCGATACTCTTTTACAGGAGATGGTTAAAGAATCCGAGCTCGAAGCTGCTTGTCATA 474
Query 446 TATTCCGAAAGTATTGTTATGGTTGGGAGGTGAATTCTCGAATAACGGCTCTGAATTTGC 505
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCTTCAGAAAGTATTGTTATGGTTGGGAGGTGAATTCTCGAATAACGGCTCTGAATTTGC 534
Query 506 TTATGAAGGTTCTTTGCCAGGTCAATCGCTCTGACCTTGCGTCTCAGGTTTTTCAAGAGA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TTATGAAGGTTCTTTGCCAGGTCAATCGCTCTGACCTTGCGTCTCAGGTTTTTCAAGAGA 594
Query 566 TGAATTACCAGGGTTGTTATCCGGACAGAGACAGTTACAGGATTTTGATGAAAGGGTTTT 625
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 595 TGAATTACCAGGGTTGTTATCCGGACAGAGACAGTTACAGGATTTTGATGAAGGGGTTTT 654
Query 626 GTCTAGAGGGGAAACTTGATGAAGCCACGCACCTGTTGTATTCAATGTTCTGGAGGATCT 685
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 655 GTCTAGAGGGGAAACTTGAGGAAGCCACTCACCTGTTGTATTCAATGTTCTGGAGGATCT 714
Query 686 CACAGAAAGGTTCAGGTGAGGACATTGTGGTTTATAAAATTCTACTGGATGCATTATGTG 745
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 715 CACAGAAAGGTTCAGGTGAGGACATTGTGGTTTATAGAATTCTATTGGATGCATTATGTG 774
Query 746 ATGCTGGTGAGGTTGATCAGGCTATTGAAATTCTTGGTAAAATCTTGAGAAAAGGACTAA 805
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 775 ATGCTGGTGAGGTTGATGATGCTATTGAAATTCTTGGTAAAATCTTGAGAAAAGGATTAA 834
Query 806 AGGCTCCGAAACGATGTTACCATCAAATTGAAGCTGGTCATTGGGAGAGTAACAGTGAGG 865
||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct 835 AGGCTCCGAAACGATGTTACCATCATATTGAAGCTGGTCACTGGGAGAGTAGCAGTGAGG 894
Query 866 GTATAAAGCGGGTGAAACGATTGTTAACCGAGACTTTGATCCGAGGCGCAATTCCCAGTT 925
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 895 GTATAGAGCGGGTGAAACGATTGTTAACCGAGACTTTGATCCGAGGTGCAATTCCCTGTT 954
Query 926 TGGATAGCTACAGTGCCATGGCTACTGATCTTTTTGAGGAAGGTAAGCTTGTTGAAGGTG 985
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGGATAGCTATAGTGCCATGGCTACTGATCTTTTTGAGGAAGGTAAGCTTGTTGAAGGTG 1014
Query 986 AAGAAGTGCTTCTTGCAATGCGAAGAAAAGGCTTTGAGCCAACACCATTTATTTACGGTG 1045
|||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 1015 AAGAGGTGCTCCTTGCAATGCGAAGCAAAGGCTTTGAGCCTACACCATTTATTTATGGTG 1074
Query 1046 CCAAGGTTAAAGCACTCTGTAAAGCCGGAAAGCTTGAAGAAGCAGTTTCTGTAATCAATA 1105
||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 1075 CCAAGGTTAAAGCACTCTGTAGAGCCGGGAAGCTTAAAGAAGCAGTTTCTGTAATCAATA 1134
Query 1106 AGGAGATGATGGAAGGTCATTGCCTTCCAACTGTTGGAGTGTATAACGTTCTTATAAAAG 1165
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 AGGAGATGATGCAAGGTCATTGCCTTCCAACAGTTGGAGTGTATAACGTTCTTATAAAAG 1194
Query 1166 GGCTATGCGATGAAGGAAAATCCATGGAGGCTGTTGGATATCTCAAAAAGATGTCTAAGC 1225
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTCTATGCGATGATGGAAAATCCATGGAGGCTGTTGGATATCTCAAAAAGATGTCTAAGC 1254
Query 1226 AAGTCTCTTGTGTAGCAAACGAAGAAACATATCAAACTCTAATGGATGGTCTATGTCGAG 1285
|||| ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1255 AAGTTTCTTGTGTAGCGAACGAAGAAACATATCAAACTCTAGTGGATGGTCTGTGTCGAG 1314
Query 1286 ATAGTCAGTTTCTTGAGGCGAGTCAGGTCATGGAGGAGATGTTGATAAAATCACACTTTC 1345
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATGGTCAATTTCTTGAGGCGAGTCAGGTCATGGAGGAGATGTTGATAAAATCACACTTTC 1374
Query 1346 CTGGTGTTGAAACTTACCATGTGATGATAAGAGGTCTTTGTGATATGGACCGGCGATATG 1405
||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1375 CTGGTGTCGAAACTTACCATATGATGATAAAAGGTCTTTGTGATATGGACCGGCGATATG 1434
Query 1406 AAGCTGTGATGTGGTTGGAAGAGATGGTTAGTCAGGATATGGTGCCGGAATCTTCTGTGT 1465
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1435 AAGCTGTGATGTGGTTGGAAGAGATGGTTAGTCAGGATATGGTACCGGAATCTTCTGTGT 1494
Query 1466 GGAAAGCTTTGGCTGAGTCTGTCTGCTTTTGTGCTATTGATGTTGTTGAGGTACTTGAGC 1525
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1495 GGAAAGCTTTGGCTGAGTCTGTCTGCTTTTGTGCCATTGATGTTGTTGAGATACTTGAGC 1554
Query 1526 ATCTAATTAGTAGCAAACGTTGATCAT 1552
||||||||||||||||||||| |||||
Sbjct 1555 ATCTAATTAGTAGCAAACGTTAATCAT 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5