BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470563
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05610.1 | Symbols: APS2 | ADP-glucose pyrophosphorylase sma... 2278 0.0
> AT1G05610.1 | Symbols: APS2 | ADP-glucose pyrophosphorylase small
subunit 2 | chr1:1673861-1675934 REVERSE LENGTH=1465
Length=1465
Score = 2278 bits (1233), Expect = 0.0
Identities = 1400/1479 (95%), Gaps = 18/1479 (1%)
Strand=Plus/Plus
Query 1 ATGCAGATTTCGTCTTCTTC--TT-TTACTAAATTTACCAATCTCTATACGATAAGATCG 57
||||||||||| |||||||| || |||| ||||||||||||||| ||| | ||||||||
Sbjct 1 ATGCAGATTTCTTCTTCTTCTTTTATTACCAAATTTACCAATCTCCATATGGTAAGATCG 60
Query 58 AGTAGTGATCATCATCAATGGAGACATAACTATAACTTGAAGCAGCTTTTCGTTCCAAGC 117
| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 61 ACTAGTGATCATCATCAATGGAGACATAACTATAACTTGAAGCAGC---T--TT------ 109
Query 118 TCATGTCCAAACCTCTCTGTTTCAAACTTTCAGCACCTTCCTTTGAACCAGAGTGTTGCG 177
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 110 TCAT-TCCAAACCTCTCTGTTTCAAACTCTCAGCACCTTCCTTTGAACCAGAGTGTTGCG 168
Query 178 GCCATAGTGTTTGGAGGAGGATCAGATACTGAGCTTTATCCACTGACCAAAACAAGATCC 237
||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 169 GCCATTGTGTTCGGAGGAGGATCAGATTCTGAGCTTTATCCACTTACCAAAACAAGATCC 228
Query 238 AAAGGAGCAATCCCCATTGCAGCAAACTACAGACATATCGATGCAGTCATTAGCAATTGC 297
|||||||||||||| |||||||||||||| |||| ||| ||||||||||| || ||||||
Sbjct 229 AAAGGAGCAATCCCTATTGCAGCAAACTATAGACTTATTGATGCAGTCATCAGTAATTGC 288
Query 298 ATCAACAGTGACATCACCAAGATCTATGCAATCACTCAGTTTAATTCCACTTCTCTCAAT 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATCAACAGTGGCATCACCAAGATCTATGCAATCACTCAGTTTAATTCCACTTCTCTCAAT 348
Query 358 TCACATCTCTCTAAAGCTTACAGTGGATTTGGACTCGGAAAAGACAGATTTGTTGAAGTC 417
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 349 TCACATCTCTCCAAAGCTTACAGTGGATTTGGACTCGGAAAAGACAGATTCGTTGAAGTC 408
Query 418 ATTGCCGCTTATCAGAGCCTGGAAGATCAAGGATGGTTTCAGGGAACTGCTGATGCGATA 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 409 ATTGCCGCTTATCAGAGCCTAGAAGATCAAGGATGGTTTCAGGGAACTGCTGATGCGATA 468
Query 478 AGAAGATGCTTGTGGGTATTTGAAGAGTTTCCAGTGACAGAGTTCTTGGTTCTTCCTGGG 537
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 469 AGAAGATGCTTGTGGGTATTTGAAGAGTTTCCAGTTACAGAGTTCTTGGTTCTTCCTGGG 528
Query 538 CATCATCTCTACAAAATGGATTATAAGACGCTAATCGAAGATCATAGAAGAAGCAGAGCG 597
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 529 CATCATCTATACAAAATGGATTATAAGATGCTAATCGAAGATCATAGAAGAAGCAGAGCG 588
Query 598 GATATAACCATTGTTGGACTAAGCTCTGTTACAGACCATGACTTTGGTTTCGGTTTCATG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GATATAACCATTGTTGGACTAAGCTCTGTTACAGACCATGACTTTGGTTTCGGTTTCATG 648
Query 658 GAAGTTGATTCCACAAAT-CTTGTCACTAGATTCACTATCAAGGGTCAACAAGATTTGAT 716
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 649 GAAGTTGATTCCACAAATGCT-GTCACTAGATTCACTATCAAGGGTCAACAAGATTTAAT 707
Query 717 CTCTGTGGAGAACAGAACAACAACAAGGAGTGAAGGAACGTCTTCTCGCTCTGTCCCAAG 776
|||||||| |||||||||| | ||||| ||||| |||||||||||| |||||||||||||
Sbjct 708 CTCTGTGGCGAACAGAACAGCGACAAGAAGTGATGGAACGTCTTCTTGCTCTGTCCCAAG 767
Query 777 CGCAGGGATTTACGTGATTGGTCGAGAACAGATGGTGAAGCTTCTGAGAGAATGTTTGAT 836
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 768 CGCAGGAATTTACGTGATCGGTCGAGAACAGATGGTGAAGCTTCTGAGAGAATGTTTAAT 827
Query 837 AAAAGCAAAAGACTTGGCCAGCGAAATCATTCCTGGTGCAATCTCTGAAGGAATGAAGGT 896
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 828 AAAATCGAAAGACTTGGCCAGCGAAATCATTCCTGGTGCGATCTCTGAAGGAATGAAGGT 887
Query 897 GAAAGCTCATATGTTTGATGGATATTGGGAAGATGTGAAGAGCGTTGGAGCTTACTATAG 956
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 888 GAAAGCTCATATGTTTGATGGATATTGGGAAGATGTGAGGAGCATTGGAGCTTACTATAG 947
Query 957 AGCTAACATGGAGAGTATTAAGAGTTATAGATTCTATGACAGACAATGTCCTCTGTACAC 1016
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 948 AGCTAACATGGAGAGTATTAAGAGTTACAGATTCTACGACAGACAATGTCCTCTGTACAC 1007
Query 1017 AATGCCTCGGTGTTTGCCTCCAAGCTCCATGAGTGAAGCTGTAATAACCAACAGTATTAT 1076
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1008 AATGCCTCGGTGTTTGCCTCCAAGCTCCATGAGTGTAGCTGTAATAACCAACAGTATTAT 1067
Query 1077 CGGAGACGGTTGCATTCTCGATAGATGTGTCATTAGAGGATCGGTGGTTGGAATGAGAAC 1136
||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1068 CGGAGACGGGTGCATTCTAGATAAATGTGTCATCAGAGGATCGGTGGTTGGAATGAGAAC 1127
Query 1137 AAGAATCGCTGATGAAGTGATTGTAGAAGATTCAATCATCGTCGGTTCTGATATTTATga 1196
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1128 AAGAATCGCTGATGAAGTGATTGTAGAGGATTCGATCATTGTCGGTTCTGATATTTATGA 1187
Query 1197 gatggaagaagatgagagaagaaaagggaaggagaagaagatagagatTCGAATAGGGAT 1256
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATGGAAGAAGATGTGAGAAGAAAAGGGAAGGAGAAGAAGATAGAGATTCGAATAGGGAT 1247
Query 1257 CGGTGAAAAGAGTCGAATAAGAAGAGCCATTGTTGATAAAAATGCCAGGATTGGTAAAAA 1316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1248 CGGTGAAAAGAGTCGAATAAGACGAGCCATTGTTGATAAAAATGCCAGGATTGGTAAAAA 1307
Query 1317 CGTTATGATTATAAACAGAGACAATGTTGAAGAAGGAAACCGAGAAGCTGAAGGATACGT 1376
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1308 CGTTATGATAATCAACAGAGACAATGTTGAAGAAGGAAACCGAGAAGCTCAAGGATACGT 1367
Query 1377 TATAAGAGAAGGAATCATTATCATACTTCGAAACGCAGTGATCCCAAATGACTCCATCCT 1436
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1368 AATAAGAGAAGGAATCATTATCATACTTCGAAACGCAGTGATCCCGAACGACTCCATCCT 1427
Query 1437 CTGAAAATTTTTCCTATTTTATAAAATCCTTCATTTTTC 1475
|||| |||||||||||||| ||||||| |||||||||
Sbjct 1428 CTGATT-TTTTTCCTATTTTACAAAATCCATCATTTTTC 1465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5