BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470564
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05620.1 | Symbols: URH2 | uridine-ribohydrolase 2 | chr1:1... 1823 0.0
> AT1G05620.1 | Symbols: URH2 | uridine-ribohydrolase 2 | chr1:1679158-1681710
FORWARD LENGTH=1280
Length=1280
Score = 1823 bits (987), Expect = 0.0
Identities = 1081/1127 (96%), Gaps = 4/1127 (0%)
Strand=Plus/Plus
Query 1 TTTTTCCGGCATTTGGGTCCCTT-AAAGTCTCCGCCTT-TGCCGTGTTGAAGTCCGATGG 58
||||||||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||
Sbjct 74 TTTTTCCGGCACTTGGGT-CCTTCAAAGTCTCCGCCTTCTGCCGTGTTGAAGTTCGATGG 132
Query 59 CGATAGGAGACCGCAAGAAGATTATCATCGATACTGATCCTGGAATCGATGATGCCATGG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 133 CGATAGGAGACCGCAAGAAGATTATCATCGATACTGATCCTGGAATCGATGATGCAATGG 192
Query 119 CGATATTCGTGGCTTTAAATTCACCAGAAGTTGATGTCATTGGCCTCACTACTATCTTTG 178
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 193 CGATATTCGTAGCTTTAAATTCACCTGAAGTTGATGTCATTGGCCTCACTACTATCTTTG 252
Query 179 GAAACGTGTATACCACTCTCGCCACTCGAAACGCCTTGCATTTGTTGGAGGTTGCGGGTA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GAAACGTGTATACCACTCTCGCCACTCGAAACGCCTTGCATTTGTTGGAGGTTGCGGGTA 312
Query 239 GGACCGATATTCCTGTGGCTGAAGGAACACATAAAACCTTCTTGAACGATACGAAGCTTC 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GGACCGATATTCCGGTGGCTGAAGGAACACATAAAACCTTCTTGAACGATACGAAGCTTC 372
Query 299 GAATTGCTGACTTTGTTCATGGAAAAGATGGGCTTGGCAACCAAAATTTCCCTCCACCTA 358
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 373 GAATAGCTGACTTTGTTCATGGAAAAGATGGGCTTGGCAACCAAAACTTCCCTCCACCTA 432
Query 359 AAGGAAAACCAATTGAAAAGTCTGGACCTGAGTTTTTAGTTGAACAAGCAAAACTTTACC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 433 AAGGAAAACCAATTGAAAAGTCTGGACCTGAGTTTTTAGTTGAACAAGCAAAGCTTTGCC 492
Query 419 CTGGTGAAATCACGGTTGTTGCTTTGGGACCACTAACAAATATCGCGTTGGCTATTCAGC 478
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 493 CTGGTGAAATCACGGTTGTTGCTTTGGGACCACTAACAAATCTCGCGTTGGCTGTTCAGC 552
Query 479 TTGATCCAGATTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGTGCATTCGCAG 538
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 553 TTGATCCAGAGTTTTCGAAAAATGTCGGACAAATTGTTCTTCTTGGTGGAGCATTTGCAG 612
Query 539 TAAACGGAAATGTAAATCCAGCTTCGGAAGCTAATATTTTTGGCGATCCAGAAGCTGCAG 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 613 TAAACGGAAATGTAAATCCAGCTTCGGAAGCTAATATTTTTGGCGATCCCGAAGCTGCAG 672
Query 599 ATATTGTGTTCACATGTGGGGCCGATATAATTGCTGTGGGGATCAATGTGACCCATCAAG 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 673 ATATTGTGTTCACATGTGGGGCCGATATAATTGCTGTGGGAATCAATGTGACCCATCAAG 732
Query 659 TTATTATGACAGCTAATGACAAGGACAAACTGGCATCATCTAACGGAAAATTTGCTCAAT 718
|||||||||||||| |||||||||||||||| |||||||| || || ||||| |||||||
Sbjct 733 TTATTATGACAGCTGATGACAAGGACAAACTAGCATCATCGAAGGGGAAATTAGCTCAAT 792
Query 719 ATCTCTGTAAAGTCCTTGATGTATACTATGATTATCATCTCACGGCTTACGAAATCAAAG 778
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 793 ATCTCTGTAAAATCCTTGATGTGTACTATGATTATCATCTCACGGCTTACGAAATCAAAG 852
Query 779 GTGTCTACCTTCATGATCCTGCGACGATCCTTGCGGCTTTCCTTCCTTCTCTATTCACTT 838
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTGTGTACCTTCATGATCCTGCGACGATCCTTGCGGCTTTCCTTCCTTCTCTATTCACTT 912
Query 839 ATACAGAAGGAGTAGCTAGAGTGCAGACAAGCGGTATCACTAGGGGACTTACTTTACTGT 898
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 913 ATACAGAAGGAGTTGCTAGAGTGCAGACAAGTGGTATCACTAGGGGACTCACTTTACTGT 972
Query 899 ACAACAATCCAAAGAAGTTTGAGGAAGAGAATGAGTGGTCAGACAAACCATCGGTAAAAG 958
||||||||| |||| ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 973 ACAACAATCTTAAGAGGTTTGAGGAAGCGAACGAGTGGTCAGACAAACCAACGGTAAAAG 1032
Query 959 TGGCAGTGACGGTTGATGCTCCTGCGGTCGTGAAGCTCATAATGGATAGGCTTATGGAGT 1018
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1033 TGGCAGTGACGGTTGATGCTCCTGCAGTCGTGAAGCTCATAATGGATAGGCTTATGGAGT 1092
Query 1019 CTTAGACCATCTTGGCTCGTTAATTAGTTATCTCTTTCTCTTTGATGTTTCATTTATTGT 1078
|||| |||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1093 CTTAAACCATCTTGGGTCGTTAATTAGTTATCTCTTTCTCTTTGATGTTTCACT-ATTGC 1151
Query 1079 GAGCCATTTCTCTTGTTTAAAATAAGGCTCTTCTTGCTGCATTATTT 1125
||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1152 GAGCCATTTCTCTTGTTAAAAATAAGGCTCCTCTTGCTGCATTATTT 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5