BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470580
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05730.1 | Symbols: | Eukaryotic protein of unknown functio... 1387 0.0
AT2G31725.1 | Symbols: | Eukaryotic protein of unknown functio... 446 2e-124
AT1G05720.1 | Symbols: | selenoprotein family protein | chr1:1... 287 2e-76
AT2G43720.1 | Symbols: | Eukaryotic protein of unknown functio... 87.9 2e-16
> AT1G05730.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr1:1718555-1720303 FORWARD LENGTH=1146
Length=1146
Score = 1387 bits (751), Expect = 0.0
Identities = 901/969 (93%), Gaps = 28/969 (3%)
Strand=Plus/Plus
Query 49 ATTCAGATCAAATAAAGCACGCATAGAAAGGAACGAACCTTGGTCCTTAACGTATTCAGA 108
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 ATTGAGATCAAATAAAGCACGCATAGAAAGGCACGAACCTTGGTCCTTAACGTATTCAGA 139
Query 109 GAGTGAGTGACAATCGGAGCAGAGAGCAAGACCGGTAAACCCTAGATCCTCGCATTCTCT 168
||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||| |
Sbjct 140 GAGTGAGTGGCAATCGGAGCAGAGTGCAAGACCGCTAAACCCTAGATCCTCACATTCTTT 199
Query 169 AGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGATGCTAACATCAAAATCATCATCACCTT 228
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |
Sbjct 200 AGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGATGCCAATATCAAAATCATCATC-GC-T 257
Query 229 CG-T-CATCAA-CATCTTCGCCATCTCTCTCTCCCTCATCAACGGATCCAAGTCTTCGCA 285
| | | ||| |||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 258 -GATAAAACAACCATCTTCGCCATCTCTCTCTGTTTCATCAACAGATCAAAGTCTTCGCA 316
Query 286 GATCCGACGCTA--C--GGTAATGTCGCTGCCTTGCTATAATCCGATCCGGTCAATTCCG 341
|||||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 317 GATCCGACGCTACTCTAACTAATGTCGCTGCCTTGCTATGATCCGATCCGGTCAATTCCG 376
Query 342 GTTTTTCAAATATCCGAAAATGCAATATTGGTATAGAGGACATCATCTCCGATTTAT-AA 400
|||||| || |||||||||| ||||| ||||||||||||| | |||||||| |||| ||
Sbjct 377 GTTTTTTAAGTATCCGAAAAAGCAATCTTGGTATAGAGGAAACCATCTCCG-GTTATAAA 435
Query 401 -AGAAAAGTCTTTAACCGACGCGAAAAGTGTTAAAACCCATCTCCAATT-ACATT-GCC- 456
| ||||||| |||||||||| |||||||||||||| | | |||||| ||||| |||
Sbjct 436 TAAAAAAGTC-TTAACCGACGTGAAAAGTGTTAAAA--C--C-CCAATTCACATTAGCCT 489
Query 457 --TGCGATCTAAAACCCCTAAAACCCTAGAATCAAAATCTG-CCATTCGAGATCGAGAGA 513
|||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct 490 GTTGCGATCTAAAACCTCTAAAACCCTAGAATCAAAATC-GCCCATTCGAGATCGAGAGA 548
Query 514 GACGATGGATCACATAGCAGCGGCAGAGGAGCAAATTATAACGGAGAGGATTAGAAGAAA 573
|||||||||||||||||| || || |||||||||||| ||||||||||||||||||||||
Sbjct 549 GACGATGGATCACATAGCGGCAGCGGAGGAGCAAATTGTAACGGAGAGGATTAGAAGAAA 608
Query 574 ACTTGAAGAAGTTAATGCATCTGCTCAATCGCAACTCTCTCCTATTCAAGATCACATCAA 633
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ACTTGAAGAAGTTAATGCAACTGCTCAATCGCAACTCTCTCCTATTCAAGATCACATCAA 668
Query 634 TTTCACCCTTCAGCAAGCTTATTTCAAATGTGCATACGAGTGCTTTGACAGAAATAGGAA 693
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTTCACCCTTCAGCAAGCCTATTTCAAATGTGCATACGAGTGCTTTGACAGAAATAGGAA 728
Query 694 GCAAGAGGAGATAGCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAATGCTCAACA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 GCAAGAGGAGATAGCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAATGCTCAACA 788
Query 754 GCATTTCGAAGGCGAAATGGCTCAGTTTCAGGAAAGGATGAACAGATCTCTCATGGTCTG 813
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GCATTTCGAAGGCGAAATGTCTCAGTTTCAGGAAAGGATGAACAGATCTCTCATGGTCTG 848
Query 814 TCAAGACAAATTTGAGGCGT-CAAAGCTCCATAAGAACAGGGTTGATGCCGCCAAAGCTA 872
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 849 TCAAGACAAATTTGAGGC-TGCAAAGCTCCATAAGAACAGGGGAGATGCCGCCAAAGCTA 907
Query 873 TGGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTGC 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 TGGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTGC 967
Query 933 AGAGAATGAAGACGTCATTCTCCATTGCCGACTAATAATAATCCTCTGTTGGGAAAAAAG 992
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 968 AGAGAATGAAGACGTCATTCTCCATTGCCGACTAATAATAATCCTCTGTTGGGAAAAAGG 1027
Query 993 GGCATCTTT 1001
|||||||||
Sbjct 1028 GGCATCTTT 1036
> AT2G31725.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr2:13486317-13487445 REVERSE LENGTH=634
Length=634
Score = 446 bits (241), Expect = 2e-124
Identities = 414/494 (84%), Gaps = 25/494 (5%)
Strand=Plus/Plus
Query 463 CTAAAACCCCTAAAACCCTAGAATCAAAA-T-CTGCCATTCGAGATCG-AGAGAGACGAT 519
|||||| ||||||| ||||| |||||||| | | || | | ||| | || | ||| ||
Sbjct 3 CTAAAA-CCCTAAAGCCCTAAAATCAAAATTAC-GCTAAAC-AGA--GAAG-GCGACAAT 56
Query 520 GGATCACATAGCAGCGGCAGAGGAGCAAATTATAACGGAGAGGA-TTAGAAGAAAACTTG 578
||||||||| || ||||| || |||||||| || |||||| || || ||||||| ||||
Sbjct 57 GGATCACATCGCTGCGGCGGAAGAGCAAATCGTATCGGAGA-GACTTCGAAGAAAGCTTG 115
Query 579 AAGAAGTTAATGCATCTGCTCA-ATCGCAACTCTCTCCTATTCAAGATCACATCAATTTC 637
|||||||||||| | ||||||| | | || || |||||||| ||||||||||||||||||
Sbjct 116 AAGAAGTTAATGTAGCTGCTCAGA-CTCAGCTTTCTCCTATCCAAGATCACATCAATTTC 174
Query 638 ACCCTTCAGCAAGCTTATTTCAAATGTGCATACGAGTGCTTTGACAGAA-ATAGGAAGCA 696
|||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||
Sbjct 175 ACCCTTCAGCAAGCTTATTTCAAATGTGCATATGAGTGCTTTGATAGAAGA-AGAAAGCA 233
Query 697 AGAGGAGATA-GCCAACTGTGTTGAGCACTGCAGTGTTCCAGTTGTCAA-TGCTCAACAG 754
|||||||||| | ||||| || ||||||||||||||||| |||||||| | ||||||||
Sbjct 234 AGAGGAGATAAGT-AACTGCGTCGAGCACTGCAGTGTTCCCGTTGTCAAAT-CTCAACAG 291
Query 755 CATTTCGA-AGGCGAAATGGCTCAGTTTCAGGAAAGGAT-GAACAGATCTCTCATGGTCT 812
||||||| | |||||||||||| ||||||||||| || ||||||||| || |||| |
Sbjct 292 TATTTCGAGAA-CGAAATGGCTCAATTTCAGGAAAG-ATTGAACAGATCACTGGTGGTGT 349
Query 813 GTCAAGACAAATTTGAGGCGTCAAAGCTCCATAAGA-ACAGGGTTGATGCCGCCAAAGCT 871
|||||||||| |||||||| ||||||||||| |||| | ||| ||| || | || |
Sbjct 350 GTCAAGACAAGTTTGAGGCCTCAAAGCTCCAGAAGATA-AGGCCTGAAGCGGTTAACGAG 408
Query 872 ATGGAGAGTTGTGTGAACACATCCATTGAGGATAGTCTCGATACATTGCCTCATATTGTG 931
||||||||||||||| ||| |||||||||||| | |||| ||||||| || |||||||||
Sbjct 409 ATGGAGAGTTGTGTGCACAAATCCATTGAGGAAAATCTCAATACATTACCACATATTGTG 468
Query 932 CAGAGAATGAAGAC 945
||||||||||||||
Sbjct 469 CAGAGAATGAAGAC 482
> AT1G05720.1 | Symbols: | selenoprotein family protein | chr1:1717447-1718909
REVERSE LENGTH=782
Length=782
Score = 287 bits (155), Expect = 2e-76
Identities = 216/244 (89%), Gaps = 9/244 (4%)
Strand=Plus/Minus
Query 84 AAC-CTTGGTCCTTAACGTATTCAGAGAGTGAGTGACAATCGGAGCAGAGAGCAAGACCG 142
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 242 AACTCTTGGTCCTTAACGTATTCAGAGAGTGAGTGGCAATCGGAGCAGAGTGCAAGACCG 183
Query 143 GTAAACCCTAGATCCTCGCATTCTCTAGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGAT 202
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 CTAAACCCTAGATCCTCACATTCTTTAGTGCTGAGCTGCTCTTTTGCTGAGATCGTCGAT 123
Query 203 GCTAACATCAAAATCATCATCACCTTCGTCAT-CAAC-ATCTTCGCCATCTCTCTCTCCC 260
|| || ||||||||||||||| | | | | |||| |||||||||||||||||||
Sbjct 122 GCCAATATCAAAATCATCATCGC-TGA-TAAAACAACCATCTTCGCCATCTCTCTCTGTT 65
Query 261 TCATCAACGGATCCAAGTCTTCGCAGATCCGACGCTACGGTAA-T---GTCGCTGCCTTG 316
|||||||| |||| |||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 64 TCATCAACAGATCAAAGTCTTCGCAGATCCGACGCTACTCTAACTAATGTCGCTGCCTTG 5
Query 317 CTAT 320
||||
Sbjct 4 CTAT 1
> AT2G43720.1 | Symbols: | Eukaryotic protein of unknown function
(DUF842) | chr2:18123267-18124338 FORWARD LENGTH=509
Length=509
Score = 87.9 bits (47), Expect = 2e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 620 CAAGATCACATCAATTTCACCCTTCAGCAA-GCTTATTTCAAATGTGCATACGAGTGCTT 678
||||| |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 123 CAAGACCACATCAATTTCACCCTTCA-AAAGGCATATTTCAAATGTGCATACGAGTGCTT 181
Query 679 TGA 681
|||
Sbjct 182 TGA 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49028527472
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5