BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470582
Length=3116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat... 3210 0.0
AT1G05760.1 | Symbols: RTM1 | Mannose-binding lectin superfamil... 508 1e-142
> AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr1:1721509-1724734 FORWARD
LENGTH=3226
Length=3226
Score = 3210 bits (1738), Expect = 0.0
Identities = 2083/2247 (93%), Gaps = 33/2247 (1%)
Strand=Plus/Plus
Query 1 ACCATCTCTATCGAATGGGTCTCCTTCCCGTCGTCGGAACTATTTCGCCGGCGCTCATCA 60
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ACCATCTCAATCGAATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCA 60
Query 61 CCCGCAAGCGTCACGCCAATCCAAAGATACAGAGACTTAACCAATCTACCTCTGAAAACA 120
||| ||| |||||||||||||||||||||||||| ||| ||||||||||| || | ||
Sbjct 61 CCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCA 120
Query 121 CTGTCTCATGGACTTCTCGCATCACTCTCCTCACACGCAATGGTCGATTAGCAGAGGCAG 180
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 121 CTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAG 180
Query 181 CGAAGGAATTCTCCGATATGAGACTCGCCGGCGTCGAGCCTAACCACATCACTTTCATTG 240
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 181 CGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAG 240
Query 241 CTATACTCTCCGGGTGTGGTGATTTTCCCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTC 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTC 300
Query 301 ATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACTGCAATTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTA 360
Query 361 TCGGCATGTACTCCAAACGTGGTCGTGTTAAGAAGGCTAGA-TGTGTTTTTGATTACATG 419
||||||||||||||||||| || ||| |||||||||||||| || |||||||||||||||
Sbjct 361 TCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTG-GTTTTTGATTACATG 419
Query 420 GAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAA 479
Query 480 GTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACG 539
Query 540 GCTATGATAAATGGGTTTGTTAATAAAGGTTTTCACGAGGAAGCTTTGGCATGGTTCCGT 599
|||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||||||||
Sbjct 540 GCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGT 599
Query 600 GAGATGCAGATTTCTGGAGTGAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCT 659
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCT 659
Query 660 TGCACAAACCTTGGTGCTCTCTCGTTTGGATTATGGGTACATCGTTATGTTTTGAGTCAG 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAG 719
Query 720 GATTTCATGAACAATGTCAGGGTGAGTAATTCACTGATTGATTTGTATTGTCGATGCGGG 779
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGG 779
Query 780 TGTGTGGAGTTTGCTCGACAAGTTTTTGACAAAATGGAGAAACGAACTGTAGTTTCGTGG 839
||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 780 TGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGG 839
Query 840 AATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCTTTAGTCTACTTC 899
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTC 899
Query 900 AGAAAAATGCAAGAAGAAAGG-TTTAAACCTGACGCAGTCACTTTCACTGGGGCACTAAC 958
|| ||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 900 AGGAAAATGCAAGA-GAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTAC 958
Query 959 CGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTCCAAATTATGAAAAG 1018
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 959 CGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATG 1018
Query 1019 TGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCG 1078
Query 1079 GGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTACAGAGCATGCCGATGAAGCCAAATGA 1138
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1079 GGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGA 1138
Query 1139 AGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGAAATCATGGGAACAATACCGTCTTAGC 1198
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1139 AGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGC 1198
Query 1199 AGAGAAGCTGATGAAGCATCTTACCGACATGAATGTGAAAACCCATTCAAATTATGTGAT 1258
||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1199 AGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGAT 1258
Query 1259 TCTCTCGAATATGTATGCGGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAA 1318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAA 1318
Query 1319 GATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTG 1378
Query 1379 CACGCATGTGTTCATGGCTGGTGACAGTGCCCATGTTGAGACCACTAATATCTGCGAGGT 1438
|| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 1379 CATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGT 1438
Query 1439 CCTCAAGCTTATTTCTTCTAATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGG 1498
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGG 1498
Query 1499 TGATCTCCTCAATGCTTGAAATCCAGGAACTTCCACATCCCAATTTTTGCTCAAGTCCTG 1558
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1499 TGATCTCCTCAATGCTTGAAATCCAGGAACCTCCACATCCCATTTTTTGTTCAAGTCCTG 1558
Query 1559 AGCTTGATCATTAGCTAAAAATGGCTGACCACAAAGAAGCCTTA---T---C---GT--- 1606
||| ||| |||| ||| ||| ||| ||||| ||||||||||||| | | ||
Sbjct 1559 AGCGTGAGCATTTGCTCAAATTGGTTGACCGCAAAGAAGCCTTACAGTGGTCTTAGTCTT 1618
Query 1607 -G-GTCTTCGAGATGATGAATTCTAGAATAAACCTCACTACATAACCATTATTGCTTGCA 1664
| ||||| |||||| |||| |||||||| |||||| |||||||||||| | |||| |
Sbjct 1619 AGAGTCTTAGAGATGCTGAACGCTAGAATATACCTCATTACATAACCATTGTCGCTTCCT 1678
Query 1665 C-AGACCTTTTTACCAGGCCCTACCAGTAAAGATCTGGGTGTACATCGCTATATAAAACC 1723
| | |||||||| ||||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct 1679 CCA-ACCTTTTTGCCAGGCCCTACCAATAAAGATCTGGGTGTATATCGCTATTTAAA-CC 1736
Query 1724 TAATGAATAGAGGCCACACAATGATATGGTGCTCTCGTGCTTTCATAAGCTTTGAATCCA 1783
| |||||||||||||||||| |||||||||||| |||| ||| ||||||| |||||||
Sbjct 1737 TGCTGAATAGAGGCCACACAAGGATATGGTGCTCCCGTGTTTTG-TAAGCTTCGAATCCA 1795
Query 1784 AGCTACCTTACCTCGGTGGCCGTCTCCTCATGCCAATATGGTAACCTGAATCCATGTGCA 1843
||||| | ||| || |||||||||||| ||| |||| ||||||||||||| |||||||
Sbjct 1796 AGCTATGTGGCCTTGGCGGCCGTCTCCTCGTGCTAATAAGGTAACCTGAATCTATGTGCA 1855
Query 1844 TTCTTCTATGTCTGGTCATGTTATGGTGAAGTTATTGCTGGTTACTGTCAAGTTAGTAAA 1903
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1856 TTCTTCTGTGTCTTGTCATGTTATGTTGATGTTATTGCTGGTTACTGTCAAGTTAGTAAA 1915
Query 1904 CAGTTAAATAACTCTCACATTTTGCAAAACTTTGGTGTTCTGTTTGCGTGGATTTTGTGA 1963
||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1916 CAGTTCAATAACTCCCACATTTTGCAACACTTTGGTGTTCTGTTTGCGTGGATTTTGTGA 1975
Query 1964 TACCTTGGG-CATCTTCTAGCATTTGTTTACCTAGCAGTGATCGTAACACAGGATTGATA 2022
||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1976 TACCTTGGGGCATTTTCTAGCATTTGTTTACCTAGCAGTGATCATAGCACAGGATTGATT 2035
Query 2023 CAGCAAAA-GATATAGGCAATACACCATCTACAAGACCTGCTACCGTGAGTGTAAATATT 2081
|||| ||| | ||||||| |||| |||||| ||||||||||| | ||||||||| ||||
Sbjct 2036 CAGCGAAATGC-ATAGGCAGTACAACATCTATAAGACCTGCTAGCTTGAGTGTAATTATT 2094
Query 2082 CTCCAACAATTTCCTTGTTAATGCATTTT-CTAAAGATAGTGA-T---GTTCTAGCTACA 2136
| |||||||| |||||||||||||||||| | || |||||||| | ||||||| ||||
Sbjct 2095 C-CCAACAATATCCTTGTTAATGCATTTTTCGAA-GATAGTGAGTTCTGTTCTAGGTACA 2152
Query 2137 TCCGGTATTGTTACTGTTGTATCATAAATGTTAAATTATCTTTGACGATTATATGTTACA 2196
|| |||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 2153 TCTGGTATTGTTAATGTTGTATCATAAAGGTTAAAGTAT-TTTGACGATTATATGTTACA 2211
Query 2197 CATATCAGTTTATTCATAGAAGCATTT 2223
|||||||||||||||||||||| ||||
Sbjct 2212 CATATCAGTTTATTCATAGAAGAATTT 2238
Score = 1129 bits (611), Expect = 0.0
Identities = 835/935 (89%), Gaps = 47/935 (5%)
Strand=Plus/Plus
Query 2224 GTATACATACAATTTCAACCCAAAACAATTTTGGACTCCGTTTCCTCTGCATTGCCCGTA 2283
||||||| ||| ||||| |||| |||||||| ||||| |||||||||||||||||||||
Sbjct 2275 GTATACAAACACTTTCAGCCCAGTACAATTTTTGACTCTGTTTCCTCTGCATTGCCCGTA 2334
Query 2284 TCTGTTTTGGGTAGAACTGTTTTAGGGCGGAGATAAACACCGATGTACTGTAGTCCCGAG 2343
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2335 TCTATTTTGGGTAGAACTGTTTTTGGGCGGAGATAAACACCAATGTACTGTAGTCCCGAG 2394
Query 2344 GCATCATAAGTCCCATGGAAACCGCCAAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 2403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2395 GCATCATAAGTCCCATGGAAACCGCCGAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 2454
Query 2404 TTTTCGTAGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCATTAGTGTTGGTAGTGAAT 2463
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2455 TTGTCGTTGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCGCTAGTGTTGGTATTGAAT 2514
Query 2464 TTGAGAGACCTTATGTGAGGATTGCTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 2523
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2515 TTGAGAGACCTCATGTGAGGATTGTTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 2574
Query 2524 GTGATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATAAAGTG 2583
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2575 GTTATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATTAAGTT 2634
Query 2584 A-AAAA-----GTTACAACCATGTTCTTGGCTTTTTAGTTGGAAGTAGAAATTGTGACGG 2637
| |||| |||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2635 ATAAAAAAAAAGTTATAACCATGTTCTTAGCATTTTAGTTGGAAGTAGAAATTGTGACGG 2694
Query 2638 A-AAAA--------T-AA------GACTTACAACGTCAAACATGTTGCCGGAAAATGGAC 2681
| |||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 2695 AGAAAAAAGAAGAGTCAAAAATCAGACTTACAACGTCAAACATGTTGCCGGAAAATGGAC 2754
Query 2682 CGTGACGGTCGGATAAAACGAGTTTTCCGTCCATCACCAACTGGAATTGGATAGACATAA 2741
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2755 CGTGACGATCGGATAAAACGAGTTTTCCGTCCATCACGAACTGGAATTGGATAGACATAA 2814
Query 2742 TTCCTCCAACGCTATGAGATAGAAATATCTGAGAGATGAAGCCATCGTGAGATCCTTCGT 2801
|||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2815 TTCCAGCGACGCCATGAGATAGAAAAATCTGAGAGATGAAGCCATCGTGAGATCCTTCGT 2874
Query 2802 CCCAGTTTACAATTGTACTGCTTCTAGCATCATGCTTCCCTACTGGTCCTATCTTCATTT 2861
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2875 CCCAGTTTACAATTGTAGTGCTTCTAGCATCATGCTTCCCTACAGGTCCTATCTTCATTT 2934
Query 2862 TCCCTTCCATTCTTCT---ACGACCAAAAACTCTAA-GCT-TTTA-TTTGGATACATAAC 2915
|||||| | || || | |||||||||| ||| || ||| ||| ||||| ||||||||
Sbjct 2935 TCCCTTTCTTTTTTTTTGTACGACCAAAA-CTCAAAAGCTCTTTTGTTTGGTTACATAAC 2993
Query 2916 GAAAA-A-CATAA--T-A-TATA----CATGTAGAGATTCATACTTGTCTAAGTTTGAAG 2965
||||| | ||||| | | |||| |||||||||||||| | || ||||| | |||||
Sbjct 2994 GAAAATAGCATAACATTAATATATATACATGTAGAGATTCAAAGTTCTCTAACTCTGAAG 3053
Query 2966 TCTCAGATTGGAATATGCTTATCCAATTTGGTATTTGATAATTCATCTTACAGGATTCAT 3025
|||||||||||||||||| ||||||||||| |||| | ||||||||||||| | ||||||
Sbjct 3054 TCTCAGATTGGAATATGCCTATCCAATTTGATATTAG-TAATTCATCTTAC-G-ATTCAT 3110
Query 3026 TGTTTTATTTCATTTATCTTTGCTTCT-CTC-C-ATTACCCAAATTGTTTTAATAAAATG 3082
||||||||| ||||||||||||||||| ||| | ||||||||| |||||||||| |||||
Sbjct 3111 TGTTTTATTGCATTTATCTTTGCTTCTTCTCTCCATTACCCAATTTGTTTTAATGAAATG 3170
Query 3083 ACTAATAGAGTTGTTAACG-GAGATTCTTTAAGAT 3116
||||||||| |||||| | |||||||||||||||
Sbjct 3171 ACTAATAGATTTGTTA-CTAGAGATTCTTTAAGAT 3204
> AT1G05760.1 | Symbols: RTM1 | Mannose-binding lectin superfamily
protein | chr1:1723734-1724486 REVERSE LENGTH=634
Length=634
Score = 508 bits (275), Expect = 1e-142
Identities = 313/332 (94%), Gaps = 0/332 (0%)
Strand=Plus/Minus
Query 2224 GTATACATACAATTTCAACCCAAAACAATTTTGGACTCCGTTTCCTCTGCATTGCCCGTA 2283
||||||| ||| ||||| |||| |||||||| ||||| |||||||||||||||||||||
Sbjct 585 GTATACAAACACTTTCAGCCCAGTACAATTTTTGACTCTGTTTCCTCTGCATTGCCCGTA 526
Query 2284 TCTGTTTTGGGTAGAACTGTTTTAGGGCGGAGATAAACACCGATGTACTGTAGTCCCGAG 2343
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 525 TCTATTTTGGGTAGAACTGTTTTTGGGCGGAGATAAACACCAATGTACTGTAGTCCCGAG 466
Query 2344 GCATCATAAGTCCCATGGAAACCGCCAAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 2403
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 465 GCATCATAAGTCCCATGGAAACCGCCGAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 406
Query 2404 TTTTCGTAGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCATTAGTGTTGGTAGTGAAT 2463
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 405 TTGTCGTTGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCGCTAGTGTTGGTATTGAAT 346
Query 2464 TTGAGAGACCTTATGTGAGGATTGCTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 2523
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 345 TTGAGAGACCTCATGTGAGGATTGTTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 286
Query 2524 GTGATGTACTCATGCGGATAGTTGAGCTCTAT 2555
|| |||||||||||||||||||||||||||||
Sbjct 285 GTTATGTACTCATGCGGATAGTTGAGCTCTAT 254
Score = 351 bits (190), Expect = 2e-95
Identities = 233/253 (92%), Gaps = 6/253 (2%)
Strand=Plus/Minus
Query 2653 AACGTCAAACATGTTGCCGGAAAATGGACCGTGACGGTCGGATAAAACGAGTTTTCCGTC 2712
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 253 AACGTCAAACATGTTGCCGGAAAATGGACCGTGACGATCGGATAAAACGAGTTTTCCGTC 194
Query 2713 CATCACCAACTGGAATTGGATAGACATAATTCCTCCAACGCTATGAGATAGAAATATCTG 2772
|||||| |||||||||||||||||||||||||| | |||| |||||||||||| |||||
Sbjct 193 CATCACGAACTGGAATTGGATAGACATAATTCCAGCGACGCCATGAGATAGAAAAATCTG 134
Query 2773 AGAGATGAAGCCATCGTGAGATCCTTCGTCCCAGTTTACAATTGTACTGCTTCTAGCATC 2832
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 133 AGAGATGAAGCCATCGTGAGATCCTTCGTCCCAGTTTACAATTGTAGTGCTTCTAGCATC 74
Query 2833 ATGCTTCCCTACTGGTCCTATCTTCATTTTCCCTTCCATTCTTCT---ACGACCAAAAAC 2889
|||||||||||| |||||||||||||||||||||| | || || | |||||||||| |
Sbjct 73 ATGCTTCCCTACAGGTCCTATCTTCATTTTCCCTTTCTTTTTTTTTGTACGACCAAAA-C 15
Query 2890 TCTAA-GCT-TTT 2900
|| || ||| |||
Sbjct 14 TCAAAAGCTCTTT 2
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154965686927
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5