BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470584
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05780.1 | Symbols: | Vacuolar ATPase assembly integral mem... 719 0.0
> AT1G05780.1 | Symbols: | Vacuolar ATPase assembly integral membrane
protein VMA21-like domain | chr1:1726608-1728404 FORWARD
LENGTH=698
Length=698
Score = 719 bits (389), Expect = 0.0
Identities = 467/504 (93%), Gaps = 7/504 (1%)
Strand=Plus/Plus
Query 40 GGTGGTTTTGCCATGGCTGGAGTTATGCACAAGTTCCTTATTGTGTCAATGTTCATGTGG 99
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 142 GGTGGTTTTGCCATGGCTGGAGTTATGCACAAGTTCCTTATTGCGTCAATGTTCATGTGG 201
Query 100 ATTCTTCCTGTTGCCATATTATATGGATTCAACTACAATTTGCTTCCTGGTTCAACGACA 159
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 202 ATTCTTCCTGTTGCCATATTATACGGATTCAACCACAATTTGCTTCCTGGTTCAACGACA 261
Query 160 TTGTCTCCTCATTCTCTAACTCTAC-TGAGCGGATTTCTTGCTGTGGTATCAGTGAACAT 218
||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||
Sbjct 262 TTGTCTCCTCATTCTCTAATTCT-CTTGAGCGGATTTCTTGCGGTGGTATCAGTGAACAC 320
Query 219 AGTGATTGTGTTCTACATATGTATGGCTC-TGAAAGAACCTGCAGATAAACACAAACCAG 277
|||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 321 AGTGATCGTGTTCTACATCTGTATGGC-CATGAAAGAACCTGCAGATAAACACAAACCAG 379
Query 278 ACGCTGCATTTCTCGCTGAGGCCAAAGATAGTGTGAGCAAATTGACAAAAGGAGCCCCAA 337
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 380 ACGCTGCATTTCTCGCTGAGGCCAAAGATAGTGTGAACAAATTGACAAAAGGAGCCACAA 439
Query 338 GCAGTGATGATCATGCACTCAAGAAACAAGAATGAGATCTTTCTTAATCCATTTTTGAAA 397
|||||||||||||||||||||| |||||||| ||||| ||||||||||||| || |||||
Sbjct 440 GCAGTGATGATCATGCACTCAAAAAACAAGAGTGAGAGCTTTCTTAATCCAATTATGAAA 499
Query 398 CGAAGAACAGCATCTGGGTTCGATCGAATGGAGCAGACCTCGGGTTAACTAAATGGATGT 457
|||||||| |||||||||| |||||||||||||||||||||||||| | |||| ||| |
Sbjct 500 TGAAGAACAACATCTGGGTTGGATCGAATGGAGCAGACCTCGGGTTATCGAAATAGAT-T 558
Query 458 TGTTACAGGATTCTGTGACATTTGAGGTTTAGGGTTGGTTAAACTAAGTAGCTGAAAATA 517
|||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| |
Sbjct 559 A-TTACAGGATTCTGTGAAAATTGAGGTTTAGGGTTGGTTAAACAAAGTAGCAGAAAA-A 616
Query 518 CCTTTTGTGTATGATGAACCGAGA 541
| | | ||||||||||||| ||||
Sbjct 617 CATGTCGTGTATGATGAACAGAGA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28030654026
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5