BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470587
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05800.1 | Symbols: DGL | alpha/beta-Hydrolases superfamily ... 2200 0.0
> AT1G05800.1 | Symbols: DGL | alpha/beta-Hydrolases superfamily
protein | chr1:1741204-1742619 FORWARD LENGTH=1416
Length=1416
Score = 2200 bits (1191), Expect = 0.0
Identities = 1342/1417 (95%), Gaps = 2/1417 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCCAAAGTCTTCACTCAAAACCCTATATGTTCTCCATCTCTAATTAGAGACAAA 60
||||||||||||||||||||||| |||||||| | ||||| ||||||| |||||||||||
Sbjct 1 ATGGCGGCCAAAGTCTTCACTCAGAACCCTATCTATTCTCAATCTCTAGTTAGAGACAAA 60
Query 61 ACTCCTCAACAAAAACACAATCTTGGCCATTTCTCTCTCTCCAAGAACACCTCTAAAAGA 120
||||||||||| ||||||||||||| |||||||||| | ||| || ||||||||||||||
Sbjct 61 ACTCCTCAACAGAAACACAATCTTGACCATTTCTCTATATCCCAGCACACCTCTAAAAGA 120
Query 121 CTCGTTGtctcttcttctataatgtcccctccgattccatcttctccgctcgctctccct 180
||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||| |||
Sbjct 121 CTCGTTGTCTCTTCTTCTACAATGTCCCCTCCGATTTCATCTTCTCCACTCTCTCTTCCT 180
Query 181 tcttcttcttcttctcaggtctttcctccttcAAGAGCACCTGCAGCAACTCTACCGTTG 240
||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||
Sbjct 181 TCTTCTTCTTCTTCTCAGGCCATTCCTCCTTCTCGAGCACCTGCAGTGACTCTACCGTTG 240
Query 241 TCTCGGATTTGGAGAGAGATACAAGGAAGCAATAACTGGGAAAATCTTATTGACCCTTTA 300
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct 241 TCTCGGGTTTGGAGAGAGATACAAGGGAGCAATAACTGGGAAAATCTCATTGAACCTCTA 300
Query 301 AGCCCTATTCTCCAACAAGAGATTACTCGCTACGGGAACTTACTCTCCGCTTCTTACAAA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCCCTATTCTCCAACAAGAGATCACTCGCTACGGGAACTTACTCTCCGCTTCTTACAAA 360
Query 361 GGGTTTGATCTAAACCCTGACTCCAAACGTTACTTGAACTGCAAGTATGGAAAAAAGAAC 420
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGGTTTGATCTAAACCCTAACTCCAAACGTTACTTGAGTTGCAAGTATGGAAAAAAGAAC 420
Query 421 TTGCTTAAAGAATCCGGAATCCATGACCCTGATGGCTACCAACTCACCAAGTATATCTAC 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 TTGCTTAAAGAATCCGGAATCCATGACCCTGATGGCTACCAAGTCACCAAGTATATCTAC 480
Query 481 GCCACTCCAGACGTCAACCTCAACCCTATCAAGAATGAGCCTAACCGTGCTCGTTGGATT 540
||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 481 GCCACACCAGACATCAACCTCAACCCTATCAAGAACGAGCCTAACCGTGCACGTTGGATC 540
Query 541 GGTTATGTAGCGGTTTCTTCTGATGAATCAGTGAAACGTTTGGGGAGGAGGGATATTGTG 600
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 541 GGTTATGTAGCGGTTTCTTCTGATGAATCGGTGAAACGTTTGGGAAGGAGGGATATTTTG 600
Query 601 GTGACGTTTCGTGGCACTGTGACCAACCATGAGTGGTTAGCTAACCTAAAGAGCTCTTTG 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGACGTTTCGTGGCACTGTCACCAACCATGAGTGGTTAGCTAACCTAAAGAGCTCTTTG 660
Query 661 ACTCCGGCTCGTCTTGATCCTCATAACCCTCGTCCTGATGTCAAGGTCGAATCCGGGTTC 720
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTCCGGCTAGGCTTGATCCTCATAACCCTCGTCCTGATGTCAAGGTCGAATCCGGGTTC 720
Query 721 TTAGGTTTATACACATCCGGTGAGAGCGAGAGCAAATTCGGGCTAGAAAGCTGCCGTGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAGGTTTATACACATCCGGTGAGAGCGAGAGCAAATTCGGGCTAGAAAGCTGCCGTGAG 780
Query 781 CAGCTTCTCTCCGAGATCTCGAGGCTTATGAACAAGCACAAGGGCGAGGAAATGAGCATC 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 781 CAGCTTCTCTCCGAGATCTCGAGGCTTATGAACAAGCACAAAGGCGAGGAAATAAGCATA 840
Query 841 ACGCTTGCGGGACATAGTATGGGGAGTTCGCTAGCTCACCTTCTAGCTTACGACATAGCA 900
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 841 ACACTTGCGGGACATAGTATGGGGAGTTCTCTAGCTCAGCTTCTAGCTTACGACATAGCG 900
Query 901 GAACTCGGTATGAACCAGAGAAGTGATGAAAAAGCTGTTCCGGTGACCGTGTTTTCGTTT 960
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 901 GAACTCGGTATGAACCAGAGAAGGGACGAAAAACCTGTTCCGGTGACCGTGTTTTCGTTT 960
Query 961 GCGGGTCCTAGGGTTGGTAACTTGGGGTTCAAAAAACGGTGTGAGGAGCTAGGAGTTAAA 1020
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCTGGTCCTAGAGTTGGTAACTTGGGGTTCAAAAAACGGTGTGAGGAGCTAGGAGTTAAA 1020
Query 1021 GTCTTGAGGATCACGAATATAAACGATCCGATCACCAAACTTCCCGGTTTCTTGTTCAAC 1080
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||
Sbjct 1021 GTCTTGAGGATCACGAATGTAAACGATCCGATCACCAAACTTCCAGGTTTCTTATTTAAT 1080
Query 1081 GAGAATTTCAGATCTTTAGGTGGTGTTTACGAACTTCCTTGGAGCTGTTCTTGCTACACT 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 GAGAATTTCAGATCTTTAGGTGGTGTTTACGAGCTTCCTTGGAGCTGTTCTTGCTACACT 1140
Query 1141 CACGTGGGAGTCGAACTCACCCTCGATTTCTTCGATGTTCAAAACATTTCTTGTGTCCAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CACGTGGGAGTCGAACTCACCCTCGATTTCTTCGATGTTCAAAACATTTCTTGTGTCCAT 1200
Query 1201 GACCTCGAGACTTACATCAATTTAGTTAACCGTCCGAGATGCTCGAGATCGGCAGTTAAT 1260
||||||||||||||||||| | |||| ||||||||||||||||||| || ||| ||||||
Sbjct 1201 GACCTCGAGACTTACATCACTCTAGTAAACCGTCCGAGATGCTCGAAATTGGCGGTTAAT 1260
Query 1261 GAGGACAATTTTGGCGGCGATTTTTTGAACAGAACAAGTGAGA-TGATGTTCGGTAAGGG 1319
|| ||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||
Sbjct 1261 GAAGACAATTTTGGCGGCGAGTTTTTGAACAGAACAAGTGA-ACTGATGTTCAGTAAGGG 1319
Query 1320 ACGACGTCGAGCGTTGCATTTAACAAACGCAGCGACCAATGCGGCATATCTACTTTGTTC 1379
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACGACGTCAAGCGTTGCATTTTACAAACGCAGCGACCAATGCGGCATATCTACTTTGTTC 1379
Query 1380 TATATCCAACCATATGTTGTATTATAATATCTTTTAG 1416
|||||||||||||||||||||||||||||| ||||||
Sbjct 1380 TATATCCAACCATATGTTGTATTATAATATATTTTAG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5