BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470597 Length=1051 Score E Sequences producing significant alignments: (Bits) Value AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1515 0.0 AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 364 7e-100 > AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:1769014-1771115 FORWARD LENGTH=1176 Length=1176 Score = 1515 bits (820), Expect = 0.0 Identities = 988/1066 (93%), Gaps = 23/1066 (2%) Strand=Plus/Plus Query 1 TCGCCACTCTC-TT-TCTCT-CGTTGTTTTCCAACAGTAACAACAATGGCGTCAGCTTCG 57 ||||||||||| || ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 6 TCGCCACTCTCTTTCTCTCTCCCTTGTTTTCCAACAGT---AACAATGGCGTCAGCTTCC 62 Query 58 AAGCAAAACCCTTCTTCATCCAAACCTCCTAGGCATCCATCTCCGATCACTGCGTCTATC 117 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | | Sbjct 63 AAGCAAAACCCTTCTTCTTCCAAACCTCCTAGGCATCCATCTCCGATCATTGCTTCAACC 122 Query 118 CCCTCTAAATCCGGTGTATCT-GAAGAATCCCAATTTCGAAACCCTAATAACCCTTCGAC 176 ||||| ||||||||||||| | || ||||||||||||||||||||||||||||| ||||| Sbjct 123 CCCTCGAAATCCGGTGTAT-TGGAGGAATCCCAATTTCGAAACCCTAATAACCCGTCGAC 181 Query 177 GTCGTCGAATTCACCGATTTCGATGGCTGTGGAGGATCAGATCCTGGGAAGTTCCAGCCA 236 ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 182 GTCATCGAATTCACCGATTTCGATGGCGGTGGAGGATCAGATCCTGGGAAATTCCAATCA 241 Query 237 CATCACACGCCCGGAGCTTCTCCGACGCAGATCGCATAACCTGAAACAGCTCGCTAGATG 296 | |||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||| Sbjct 242 CCTCACTCGCCCGGAGCTTCTCCGACGCAGATCGCACAACCTGAAGCAGCTCTCTAGATG 301 Query 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 302 CTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCACAACATAGATATTATAG 361 Query 357 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTAA 416 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 362 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATTATCACCAAAACAAGAGACGTAA 421 Query 417 GGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATG---AT------AA 467 ||| |||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 422 GGTTGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGATAATGATAATAACAACAA 481 Query 468 CGATGGCGTTAAGGCTGGTAACTGTGTGGCTTGTGGTAATGGATGCAAATCTAAGGCCAT 527 ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| Sbjct 482 CGATGGCGTTAAGGCTGGTAATTGTGTTGCTTGTGGTAGTGGATGCAAATCTAAGGCCAT 541 Query 528 GGCACTCTCCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTACAC 587 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 542 GGCACTCACCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTATAC 601 Query 588 GTCTTGTACTTACGTCAACAAAAGAGCTCAGTCAAAAGCAATAACTTGTCCAAAACCAAC 647 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 602 GTCTTGTACTTACGTCAATAAAAGAGCTCAGTCGAAAGCAATAACTTGTCCAAAACCAAC 661 Query 648 ACTTGCATCGACTGTTCCTGCTCTGTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 707 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 662 TCTTGCATCGACTGTTCCTGCCCTCTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 721 Query 708 TGCTCGAGCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCCCCCGAA 767 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 722 TGCTCGAGCTTTGAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAGGCCTCCCCCGAA 781 Query 768 ACTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCaaaaagaaaagatccacg 827 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 782 ACTCCATGACATAGTAGCTGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 841 Query 828 aaaagagggaaaattgaaaagcttagtaaaagaagaaaTTACAAGCTAAATCAAACAG-- 885 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 842 AAAAGAGGGCAAATTGAAAAGCTTAGTAAAAGAAGAACTTACAAGCTAAATCAAACAGAG 901 Query 886 TGAGCAGGAGCTGTTTGTTACCACGATTGTGCAAAAATGGATGATTTAGCTGTGAGTGCC 945 ||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||| Sbjct 902 TGAGCAGAAGCTGTTTGTTTCCACAATTGTGCAAAAATGGAAGATTTAGCTGTGAGTGCC 961 Query 946 TCTACAAGGTAACTTACAACTTACAAGGAGCTTAAATCAAGCGAGGAGCAACATTGACAC 1005 | |||||||| | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 962 TTTACAAGGT---T-ACAACTTACAAGGAGCTTCAATCAAGCGAGGAGCAACATTGACAC 1017 Query 1006 AATGGTTTAGTTAAGCCGTCTAGGTCGAAATAAGGATATCTTTGGA 1051 ||||||||| |||||| || ||| | ||||| ||||||| |||||| Sbjct 1018 AATGGTTTAATTAAGCTGTTTAGCTTGAAATGAGGATATATTTGGA 1063 > AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast hits to 70 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:19949562-19951290 REVERSE LENGTH=1154 Length=1154 Score = 364 bits (197), Expect = 7e-100 Identities = 558/724 (77%), Gaps = 58/724 (8%) Strand=Plus/Plus Query 181 TCGAATTCACCGATTTCGATGGCT-GTGGAGGATCAGATCCTGGGAAGTTCCAGCCACAT 239 ||||||||||||||| |||| | | || ||| | ||||| | ||| || || ||| | Sbjct 183 TCGAATTCACCGATTACGAT-GTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCT 241 Query 240 CACACGCCCGGAGCTTCTCCGACGCAGATC-GCATAACCTGAAA-CAGCTCG-CTAGATG 296 ||||||||| ||||||||||||||| || | | | ||||| ||| ||||| | | || || Sbjct 242 CACACGCCCAGAGCTTCTCCGACGCCGAGCAG-ACAACCT-AAAGCAGCTGGCCAAG-TG 298 Query 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356 ||| | | ||||||| |||||| |||||||||||||||||||||||||||| ||||| | Sbjct 299 TTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTG 358 Query 357 CTGGAACTATGGTGTTAGTCC-TTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTA 415 || || ||||| ||||||| ||| ||||| || | || | ||| | || | || Sbjct 359 GTGTAAGTATGGGGTTAGTCAGTTT-AAAGACGA-A--CAAAATCAAT-C--GA-A--TA 408 Query 416 AGGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATGATAACGATGGCG 475 || ||| ||| || | || | |||||||| ||||| || | ||| ||||| | Sbjct 409 AG--AGACGGAGG--CTTG--ATCCA---GAAGGTAGTGGAGATAAGGGTAATGATGGTG 459 Query 476 TTAAGGCTGGTAACTGTG-T---GGCTTGTG---GTAATGGATGCAAATCTAAGGCCATG 528 | || || ||| | | || || || ||| |||||||||| |||| || ||| Sbjct 460 ATCAGTATGCAAACAGCAATTCCGGGTTCTGTATGTA-TGGATGCAAAGCTAAAGCTATG 518 Query 529 GCACTCT-CCAATTACTGTCAGCTT-CATATCCTCATGGATAAAAAGCAGAAGCTTTACA 586 || || | |||| |||||||| || ||||| |||| ||||| ||||||||||| |||| Sbjct 519 GCGCT-TACCAAATACTGTCAA-TTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACA 576 Query 587 C-GTCTTGTACTTACGTCAACAAAAGAGCTC-AGTCAAAAGCAATAACTT-GTCCAAAAC 643 | | ||| || |||||| ||| ||| ||| || || | || || ||| || ||||| Sbjct 577 CTGG-TTGCACAAACGTCATCAACAGATCTCCAG-CAGGACCATTA-CTTTGTGGAAAAC 633 Query 644 CAACACTTGCATCGACTGTTCCTGCT-CTGTGTAATGTGCACTTCCAGAAAGCCCAAAAG 702 ||||||| |||||||||||||||| | |||||||| ||||||| ||||||||| || ||| Sbjct 634 CAACACTAGCATCGACTGTTCCTG-TACTGTGTAACGTGCACTACCAGAAAGCACAGAAG 692 Query 703 GATGTTGCTCGA-GCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCC 761 ||||||| | | |||||||| ||||||||||| ||||| |||||| ||||||||||||| Sbjct 693 AATGTTGC-CAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCC 751 Query 762 CCCGAAA-CTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCaaaaagaaaag 820 ||| ||| ||||||| |||||||| |||||||||||||| ||||||||| |||||||| Sbjct 752 CCC-AAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAA 810 Query 821 atccacgaaaag-agggaaaa-ttgaaaagct-tagtaaaagaagaaaTTACAAGCTAAA 877 |||||| | ||| |||| ||| || ||||| | ||||||| |||||||| ||||||| | Sbjct 811 ATCCAC-ATAAGGAGGGTAAACTT-AAAAG-TGTAGTAAAGGAAGAAATGACAAGCTGAG 867 Query 878 TCAA 881 |||| Sbjct 868 TCAA 871 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51540234822 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5