BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470597
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1515 0.0
AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 364 7e-100
> AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G31600.1);
Has 101 Blast hits to 100 proteins in 32 species: Archae -
0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:1769014-1771115
FORWARD LENGTH=1176
Length=1176
Score = 1515 bits (820), Expect = 0.0
Identities = 988/1066 (93%), Gaps = 23/1066 (2%)
Strand=Plus/Plus
Query 1 TCGCCACTCTC-TT-TCTCT-CGTTGTTTTCCAACAGTAACAACAATGGCGTCAGCTTCG 57
||||||||||| || ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 6 TCGCCACTCTCTTTCTCTCTCCCTTGTTTTCCAACAGT---AACAATGGCGTCAGCTTCC 62
Query 58 AAGCAAAACCCTTCTTCATCCAAACCTCCTAGGCATCCATCTCCGATCACTGCGTCTATC 117
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | |
Sbjct 63 AAGCAAAACCCTTCTTCTTCCAAACCTCCTAGGCATCCATCTCCGATCATTGCTTCAACC 122
Query 118 CCCTCTAAATCCGGTGTATCT-GAAGAATCCCAATTTCGAAACCCTAATAACCCTTCGAC 176
||||| ||||||||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 123 CCCTCGAAATCCGGTGTAT-TGGAGGAATCCCAATTTCGAAACCCTAATAACCCGTCGAC 181
Query 177 GTCGTCGAATTCACCGATTTCGATGGCTGTGGAGGATCAGATCCTGGGAAGTTCCAGCCA 236
||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 182 GTCATCGAATTCACCGATTTCGATGGCGGTGGAGGATCAGATCCTGGGAAATTCCAATCA 241
Query 237 CATCACACGCCCGGAGCTTCTCCGACGCAGATCGCATAACCTGAAACAGCTCGCTAGATG 296
| |||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 242 CCTCACTCGCCCGGAGCTTCTCCGACGCAGATCGCACAACCTGAAGCAGCTCTCTAGATG 301
Query 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 302 CTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCACAACATAGATATTATAG 361
Query 357 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTAA 416
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 362 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATTATCACCAAAACAAGAGACGTAA 421
Query 417 GGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATG---AT------AA 467
||| |||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 422 GGTTGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGATAATGATAATAACAACAA 481
Query 468 CGATGGCGTTAAGGCTGGTAACTGTGTGGCTTGTGGTAATGGATGCAAATCTAAGGCCAT 527
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 482 CGATGGCGTTAAGGCTGGTAATTGTGTTGCTTGTGGTAGTGGATGCAAATCTAAGGCCAT 541
Query 528 GGCACTCTCCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTACAC 587
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 542 GGCACTCACCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTATAC 601
Query 588 GTCTTGTACTTACGTCAACAAAAGAGCTCAGTCAAAAGCAATAACTTGTCCAAAACCAAC 647
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 GTCTTGTACTTACGTCAATAAAAGAGCTCAGTCGAAAGCAATAACTTGTCCAAAACCAAC 661
Query 648 ACTTGCATCGACTGTTCCTGCTCTGTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 707
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 662 TCTTGCATCGACTGTTCCTGCCCTCTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 721
Query 708 TGCTCGAGCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCCCCCGAA 767
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 722 TGCTCGAGCTTTGAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAGGCCTCCCCCGAA 781
Query 768 ACTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCaaaaagaaaagatccacg 827
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ACTCCATGACATAGTAGCTGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 841
Query 828 aaaagagggaaaattgaaaagcttagtaaaagaagaaaTTACAAGCTAAATCAAACAG-- 885
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 842 AAAAGAGGGCAAATTGAAAAGCTTAGTAAAAGAAGAACTTACAAGCTAAATCAAACAGAG 901
Query 886 TGAGCAGGAGCTGTTTGTTACCACGATTGTGCAAAAATGGATGATTTAGCTGTGAGTGCC 945
||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 902 TGAGCAGAAGCTGTTTGTTTCCACAATTGTGCAAAAATGGAAGATTTAGCTGTGAGTGCC 961
Query 946 TCTACAAGGTAACTTACAACTTACAAGGAGCTTAAATCAAGCGAGGAGCAACATTGACAC 1005
| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 962 TTTACAAGGT---T-ACAACTTACAAGGAGCTTCAATCAAGCGAGGAGCAACATTGACAC 1017
Query 1006 AATGGTTTAGTTAAGCCGTCTAGGTCGAAATAAGGATATCTTTGGA 1051
||||||||| |||||| || ||| | ||||| ||||||| ||||||
Sbjct 1018 AATGGTTTAATTAAGCTGTTTAGCTTGAAATGAGGATATATTTGGA 1063
> AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G31600.1); Has 70 Blast
hits to 70 proteins in 17 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink). | chr3:19949562-19951290
REVERSE LENGTH=1154
Length=1154
Score = 364 bits (197), Expect = 7e-100
Identities = 558/724 (77%), Gaps = 58/724 (8%)
Strand=Plus/Plus
Query 181 TCGAATTCACCGATTTCGATGGCT-GTGGAGGATCAGATCCTGGGAAGTTCCAGCCACAT 239
||||||||||||||| |||| | | || ||| | ||||| | ||| || || ||| |
Sbjct 183 TCGAATTCACCGATTACGAT-GTTACAAGAAGATGAAATCCTCGCAAGCTCTAGTCACCT 241
Query 240 CACACGCCCGGAGCTTCTCCGACGCAGATC-GCATAACCTGAAA-CAGCTCG-CTAGATG 296
||||||||| ||||||||||||||| || | | | ||||| ||| ||||| | | || ||
Sbjct 242 CACACGCCCAGAGCTTCTCCGACGCCGAGCAG-ACAACCT-AAAGCAGCTGGCCAAG-TG 298
Query 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356
||| | | ||||||| |||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 299 TTATAAAAACCATTATTGGGCTTTAATGGAGGATCTCAAGGCGCAACACAGGGATTATTG 358
Query 357 CTGGAACTATGGTGTTAGTCC-TTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTA 415
|| || ||||| ||||||| ||| ||||| || | || | ||| | || | ||
Sbjct 359 GTGTAAGTATGGGGTTAGTCAGTTT-AAAGACGA-A--CAAAATCAAT-C--GA-A--TA 408
Query 416 AGGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATGATAACGATGGCG 475
|| ||| ||| || | || | |||||||| ||||| || | ||| ||||| |
Sbjct 409 AG--AGACGGAGG--CTTG--ATCCA---GAAGGTAGTGGAGATAAGGGTAATGATGGTG 459
Query 476 TTAAGGCTGGTAACTGTG-T---GGCTTGTG---GTAATGGATGCAAATCTAAGGCCATG 528
| || || ||| | | || || || ||| |||||||||| |||| || |||
Sbjct 460 ATCAGTATGCAAACAGCAATTCCGGGTTCTGTATGTA-TGGATGCAAAGCTAAAGCTATG 518
Query 529 GCACTCT-CCAATTACTGTCAGCTT-CATATCCTCATGGATAAAAAGCAGAAGCTTTACA 586
|| || | |||| |||||||| || ||||| |||| ||||| ||||||||||| ||||
Sbjct 519 GCGCT-TACCAAATACTGTCAA-TTGCATATTCTCAAGGATAGTAAGCAGAAGCTCTACA 576
Query 587 C-GTCTTGTACTTACGTCAACAAAAGAGCTC-AGTCAAAAGCAATAACTT-GTCCAAAAC 643
| | ||| || |||||| ||| ||| ||| || || | || || ||| || |||||
Sbjct 577 CTGG-TTGCACAAACGTCATCAACAGATCTCCAG-CAGGACCATTA-CTTTGTGGAAAAC 633
Query 644 CAACACTTGCATCGACTGTTCCTGCT-CTGTGTAATGTGCACTTCCAGAAAGCCCAAAAG 702
||||||| |||||||||||||||| | |||||||| ||||||| ||||||||| || |||
Sbjct 634 CAACACTAGCATCGACTGTTCCTG-TACTGTGTAACGTGCACTACCAGAAAGCACAGAAG 692
Query 703 GATGTTGCTCGA-GCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCC 761
||||||| | | |||||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 693 AATGTTGC-CAAAGCTTTAAAAGATGCTGGTCACAATGTCTCTTCAACAAGCAAGCCTCC 751
Query 762 CCCGAAA-CTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCaaaaagaaaag 820
||| ||| ||||||| |||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 752 CCC-AAAGCTCCATGTTATAGTAGCTGCATTTGTGCATCACATTCAAGCACAAAGAAAAA 810
Query 821 atccacgaaaag-agggaaaa-ttgaaaagct-tagtaaaagaagaaaTTACAAGCTAAA 877
|||||| | ||| |||| ||| || ||||| | ||||||| |||||||| ||||||| |
Sbjct 811 ATCCAC-ATAAGGAGGGTAAACTT-AAAAG-TGTAGTAAAGGAAGAAATGACAAGCTGAG 867
Query 878 TCAA 881
||||
Sbjct 868 TCAA 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5