BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470600
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05880.2 | Symbols: ARI12 | RING/U-box superfamily protein |... 2122 0.0
> AT1G05880.2 | Symbols: ARI12 | RING/U-box superfamily protein
| chr1:1775643-1778553 FORWARD LENGTH=1726
Length=1726
Score = 2122 bits (1149), Expect = 0.0
Identities = 1367/1472 (93%), Gaps = 16/1472 (1%)
Strand=Plus/Plus
Query 50 ATCGGAGGCCGAGGCGGAGGCGTATGAGTCGTATGTCAACGCAGCTTTAGAAGATGGTCA 109
|||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 36 ATCGGAGGTGGATGCGGAGGCGGATGAGTCGTATGTCAACGCAGCTTTAGAAGATGGTCA 95
Query 110 GACCACaaaaaaaTCTGTCCAACGGAATTATGCAACTGTTCTGACAGAGGAAGATATTCG 169
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 96 GACCGGAAAAAAATCTGTCCAGCGGAATTATGCAACTGTTCTGACAGAGGAAGATATTCG 155
Query 170 AGCGCTTATGGAAATTGACATTCGAAGTGTTTCAGATCTTACTTCCCTCTCCAAAGCTGA 229
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 156 AGCGCTTATGGAAATTGACGTTCAAAGTGTTTCAGATTTTACTTCCCTCTCCAAAGCTGA 215
Query 230 AGCCACACTTCTGCTTTCTCACTTGAGATGGGATGTTGA-TGATAT-TCGTGAACAATGG 287
|||||||||||||||||||||||| |||||| ||||||| || ||| | || ||||||||
Sbjct 216 AGCCACACTTCTGCTTTCTCACTTAAGATGGAATGTTGATTG-TATAT-GTAAACAATGG 273
Query 288 TCTGCTGGTGCTCAGATTGTTAGAGAAAGCGTGGGCTTATTAGAACTTGATCCACCTTCT 347
|||||||||||||| | ||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 274 TCTGCTGGTGCTCAAAGTGTTAGAGACAGCGTCGGCTTATTGGAGCTTGATCCACCTTCT 333
Query 348 GATGACAACGAGTATTTTTGCGGAGCCTGTGGCAAATCAAACCCACATAAGAACTTCGCA 407
||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 334 GATGACAACGAATATTTTTGCGGAGCCTGTGGCGAATCACACCCACATAAGAACTTGGCA 393
Query 408 TCGGTCTCTTGTGGCCATCGTATATGCACTCGCTGCTGGAAAAGCCACATCAACAAAATC 467
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 394 TCGGTCTCTTGTGGTCATCGTATATGCACTCGCTGCTGGACAAGCCATATCAACAAAATC 453
Query 468 ATCAGTGAAAAGCCATCTGCTGAATGGAATCTTTGGCTGAAATGCCCTGTTCGTGTTGGT 527
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 454 ATCAGTGAAAAGCCAGCTGCTGAATGGAATCTTTGGCTGAAATGTCCTGTTCGTGTTGGT 513
Query 528 CTCCACGCTTCTTGTCCAGCTTCTGTTGGTCGAGATATGATTGAGGA-ATTTGCTTCC-A 585
||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||| |
Sbjct 514 CTCCACGCTTCTTGTCCAGCTTCTGTTGGTCTAGATACGATTGA-GAGATTTGCTTCCAA 572
Query 586 GGGAAGAGAAGTTCAATTACAATCAATATCTCCTTAGAACTTACGTTGAGAACAGAGAGA 645
| | |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 573 GAG-AGAGAAGTTCAATTACAATCAATATCTCCTTAGATCTTACGTTGACAACAGAGAAA 631
Query 646 CGATGAAATGGCATCCTATCCGGGGGTCTAGATGCGCGATTGATCTTAGTCCTGATTCTG 705
| ||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||
Sbjct 632 CAATGAAATGGCATCCTATCCAGGGGTCTAGATGCGCCATTGATCTTAGTCCAGGTTCTG 691
Query 706 GAAATGCCAGTGTCTCCTGTCTCCGTTTGGTTAGATTCTGTTGGAATTGCAGAGAGGATG 765
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 692 GAAATGCCAGTGTCTCCTGTCACCGTTTGGTTAGATTCTGTTGGAATTGCAGAGAAGACG 751
Query 766 CTCACAGCCCTGTGGACTGTAAAACTGCTGCAAAATGGCTACTAGAAAATGCGGTGCCTT 825
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CTCACAGTCCTGTGGACTGTAAAACTGCTGCAAAATGGCTACTAGAAAATGCGGTGCCTT 811
Query 826 GTCCCACGTGTATGCAAAGTATCCCACGAAATCAAGATAATTCACTGAAGATGAAATGCT 885
|||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GTCCCAAGTGTAAGCTAAGGATCCCACGAAATCAAGATAATTCACTGAAGATGAAATGCT 871
Query 886 TACCTTGTAACTACGAATTCTGTTGGTACTGCCGTCTCGACTGGATTGAACACCTGGAAG 945
||||||||||||| | |||||||||| ||||| | |||||||||||||| || ||||||
Sbjct 872 TACCTTGTAACTATGTTTTCTGTTGGTTCTGCCATGTCGACTGGATTGAAGACATGGAAG 931
Query 946 GAACTGGTGGTGATTCATACAC--TTGTAACTTCAATGCTGTCTCGAGTGATCAAAGTGG 1003
||||||||||||||| ||||| ||||| |||| ||||||||| |||||||||| ||||
Sbjct 932 GAACTGGTGGTGATT--TACACTTTTGTACCTTCGATGCTGTCTTGAGTGATCAACGTGG 989
Query 1004 GGAAATGTCAGAATCTGATCCAAATAGATACGGAGATTGCTATGAAGATT-GGAGCAGTA 1062
| ||||||||||||||||| |||||||||||| |||||| |||||| ||| ||| |||||
Sbjct 990 GAAAATGTCAGAATCTGATTCAAATAGATACGAAGATTGTTATGAAAATTGGGA-CAGTA 1048
Query 1063 ATGAATTGTTGATGCAAAAAGCAGAAGCAAACCTGCCAAAACTAGATACTGCTATTAAGG 1122
||||||||||||||||||| | | |||||||||||||||||||||||||| |||| |||
Sbjct 1049 ATGAATTGTTGATGCAAAAGGAACAAGCAAACCTGCCAAAACTAGATACTATTATTCAGG 1108
Query 1123 ATCTAAGTAACACACAGTTAGAAAACGTATCACAGCTTAAGTTCATCCTAGAAGCTGGGC 1182
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1109 AACTAAGTAACACACAGTTAGAAAACGTATCGCAGCTTAAGTTCATCCTAGAAGCTGGAC 1168
Query 1183 TTCAGATCATAGAATGTCTAAGGGTCCTGAAATGGACTTATGTTTATGGATATTACCTTC 1242
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1169 TTCAGATCATAGAATGTAGAAGGGTCCTGGAATGGACTTATGTTTATGGATATTACCTTA 1228
Query 1243 GAGAGGATGAGGTCGGGAAGCAAAATTTATTGAAGGATACGCAAGAGAGGTTGAAGAATT 1302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1229 GAGAGGATGAGGTCGGGAAGCAAAATTTATTGAAGGATACGCAAGAGAGGTTGAAGAAGT 1288
Query 1303 TTGTGGAGAATCT-AAATCACTGTTTGGTGACTAATCTGGAGCCGTTTCGTTACGAGGAG 1361
||||||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1289 TTGTGGAAAATCTCAAA-CACTGTTTGGAGACTAATCTGCAGCCGTTTCGTTACGAGGAG 1347
Query 1362 GAACCATCAAAGGATTTCAAAGCCTTCCGCATCAAGTTAACTGAACTAACTAGCCTAACG 1421
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1348 GAACCGTCAAAGGATTTCAATGCCTTCCGCATCAAGTTAACCGAACTAACTAGCCTAACG 1407
Query 1422 CGGAACCACTATGAGAATGTGGTAAAAGATATAGAGAATGGCTTAGCTAGCGTTGTCTCT 1481
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1408 CGGAACCACTATGAGAATGTGGTAAAAGATGTAGAGAATGGCTTAGCTAGTGTTGTCTCT 1467
Query 1482 GAAGGGGAAGCTAGTGGTTCGGGCCGTAATCA 1513
|| |||||||| |||||||| |||||||||||
Sbjct 1468 GAGGGGGAAGCAAGTGGTTCAGGCCGTAATCA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5