BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470603
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05894.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2124 0.0
> AT1G05894.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G31480.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa
- 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr1:1784803-1786292 FORWARD
LENGTH=1490
Length=1490
Score = 2124 bits (1150), Expect = 0.0
Identities = 1338/1424 (94%), Gaps = 31/1424 (2%)
Strand=Plus/Plus
Query 1 TTACAGAAAGTGATTGGGCACTTCAATGGCTTTCACAAATGAAAAAGATGCAGGATCTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4 TTACAGAAAGTGATTGGGCACTTCAATGGCTTTCACAAATGAAAAAGAT---GGATCTAA 60
Query 61 GGGATTTGTGAAGAGAGTGGCTTCATCTTTCTCCATGAGGAAGAAGAAGAATGCAACAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGATTTGTGAAGAGAGTGGCTTCATCTTTCTCCATGAGGAAGAAGAAGAATGCAACAAG 120
Query 121 TGAACCCAAGTTGCTTCCAAGATCGAAATCAACAGGTTCTACTAACTTTGAATCCATGAG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TGAACCCAAGTTGCTTCCAAGATCGAAATCAACAGGTTCTGCTAACTTTGAATCCATGAG 180
Query 181 GCTACCTGCAACAAAGAAGATTTCAGATGTCACAAACAAAACAAGGATCAAACCATCAGG 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCTACCTGCAACGAAGAAGATTTCAGATGTCACAAACAAAACAAGGATCAAACCATTAGG 240
Query 241 TGGTGTAACACCACCACAATTAAGAAGGGAAAAGATCGATGATCGTGGTGGTGGGATC-A 299
||||||| ||||| ||||| ||||||||||||||||||||||| |||||| | |
Sbjct 241 TGGTGTAGCACCAGCACAACCAAGAAGGGAAAAGATCGATGATC------GTGGGA-CGA 293
Query 300 ATAACAAGTTTGTAAAATGGAGAAGCTTTGATGATAGTGATTCTATTTGGTTATCTTCAG 359
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 294 ATAACAAGTTTGGAAAATGGAGAAGCTTTGATGATAGTGATTCCATTTGGTTATCTTCAG 353
Query 360 ATTGTGCATCTCCTACTTCTCTTCTTGAGGAACGCAGGTTATCTGTTTCGTTTCGTTTCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATTGTGCATCTCCTACTTCTCTTCTTGAGGAACGCAGGTTATCTGTTTCGTTTCGTTTCT 413
Query 420 CGGTTGATGAGAGTGTAGTCTCGTGGTTATCAAACCTTGCTAAAGCTTCCCTTTCTCTGA 479
||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||
Sbjct 414 CGGTTGATGAGAGTGTAGTGTCTTGGTTATCAAACCTTGCCAAAACTTCCCTTTCTCTGA 473
Query 480 ATCATCAAGAAGTAAGTTCCATTAAAGACCGTCCCAGAATCCCAAGAAACACTAAAGAGA 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 474 ATCATCAAGAAGTAAGTTCCATTAAAGACCGTCCCAGAATCCCGAGAAACACTAAAGAGA 533
Query 540 A--C-----ATA--CAGAAGAAAGATTCATTTAGTTCTGCTCCAAATCTCACCGTTATTG 590
| | ||| |||||||||||||||| | |||||| |||||||||||||||| | |
Sbjct 534 ATGCAGAAAATATTCAGAAGAAAGATTCATCTCGTTCTGTTCCAAATCTCACCGTTGTAG 593
Query 591 ATTCTTCTACTCAGAGTTCACAAGGAAAGAAAGTTAA-CTTTTCACAATCTTCAGGTATA 649
||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
Sbjct 594 ATTCTTCTACTCAGAGTTCACAAGGAAAGAAAG-TAAGCTTTTCAAAATCTTCAGGTACA 652
Query 650 GAACTTGAATCAGGAAATCATTCTCCTTCTCTGATAATCTCCTCTGATGTACCATCTGAT 709
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 653 CAACTTGAATCAGGAAATCATGCTTCTTCTCTGATAATCTCCTCTGATGTTCCATCTGAT 712
Query 710 CCGAATAATCACACGGCAACTTCTTTGGTTCGTAAGATAAGTTTGGATGAGAAAAGTGCA 769
| |||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||
Sbjct 713 CTGAATAATCACACGGCAACATCTTTGGTTCGTGAGATATGTCTGGATGAGAAAAGTGCA 772
Query 770 GAGATTGTGGATTCTAAGAGCAGTAGTAGTAATGTCGATGAGCCGCTTTTCTGGCCATAT 829
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 GAGATTGTGGATTCTAAGAGCAGTGGTAGTAATGTCGATGAGCCGCTTTTCTGGCCATAT 832
Query 830 GAACAGAGATTTGATTGGACACCTGAGGATATCTTGAAGCATTTCTCAATGTCACATCGG 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 833 GAACAGAGATTTGATTGGACACCTGAGGATATTTTGAAGCATTTCTCAATGTCACCTCGA 892
Query 890 AGAAAGAAATTATTCAATGCCAAAGTTTCTGCAGGTAGCTCTCCAAGATCCATGAGAGCA 949
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGAAAGAAATTATTGAATGCCAAAGTTTCTGCAGGTAGCTCTCCAAGATCCATGAGAGCA 952
Query 950 CAACTTCTCCAAGCAAGAAAACTAGATCTTAAAGATGGTAGTAAGAGAAAGCTTGTGTTC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CAACTTCTCCAAGCAAGAAAACTAGATCTTAAAGATGGTAGTAAGAGAAAGCTTGTGTTC 1012
Query 1010 AATGGCCCTTTAACAAACGCATCCAAGATTCCAGAGCTCAAAAGAACTATCAGCAATAAC 1069
||||||||||||||||||||| |||||||||||||||||||||||| || | | |
Sbjct 1013 AATGGCCCTTTAACAAACGCAGCCAAGATTCCAGAGCTCAAAAGAA--AT-A--A----C 1063
Query 1070 AGCAACAAGAAAAATGACAGCATCAAAAACGAGCCCATCAGGAACTGCGTGAAGAGGAAC 1129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1064 AGCAACAAGAAAAATGACAGCATCAAGAACGAGCCCATCAGGAACTGCGTGAAGAGGAAC 1123
Query 1130 AAAAGTTTGCCATCAAGGTTGAGAAAATCAAGCAAAACATGTTCAAAGGTTGTACCTTTT 1189
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1124 AAAAGTTTGCCGTCAAGGTTGAGAAACTCGAGCAAAACATGTTCAAAGGTTGTACCTTTT 1183
Query 1190 GAAGTTGCTGAAGAAGTGATTGCCGTAGAGAGAGCCAAAGTGGAAATAACAGCTAGAAAG 1249
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1184 GAAGTTGCAGAAGAAGTGATTGCAGCAGAGAGAGCCAAAGTGGAAATAACAGCTAGAAAG 1243
Query 1250 CTCATAAACCGTAGAAGCAAGACAATGTTGGAAGATGATTTCGCATTGATTAATGATTTT 1309
||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||| ||
Sbjct 1244 CTCATAAACCGCAGAAGCAAGACAATGTTGGAAGACGATTTCTCATTGATGAATGACTTC 1303
Query 1310 TCAATAGAAAACGCAGTGGGGCTTGGTGAGTTTAAGGGTAGAGAGGGTATAGATTCAGAA 1369
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1304 TCAATAGAGAACGCAGTGGGGCTTGGTGAGTTCAAGGGTAGAGAGGGCATAGATTCAGAA 1363
Query 1370 TTTAACTCTGACACTTTCTTGTTCGATGATTCTCTTTGAAACTA 1413
||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1364 TTTAACTCTGACATTTTCTTGTTCGATGATTCCCTTTAAAACTA 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5