BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470604
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05900.2 | Symbols: ATNTH2, NTH2 | endonuclease III 2 | chr1... 1831 0.0
> AT1G05900.2 | Symbols: ATNTH2, NTH2 | endonuclease III 2 | chr1:1786856-1789676
FORWARD LENGTH=1375
Length=1375
Score = 1831 bits (991), Expect = 0.0
Identities = 1228/1337 (92%), Gaps = 38/1337 (3%)
Strand=Plus/Plus
Query 1 TGACTTTGATGAAACACAAAAATTGA-T-GAT-TCTCA--C-CACCGGAGCCGCTTCAAC 54
||| |||||||||||||||||||||| | | | | | | | ||||||||||||||||||
Sbjct 7 TGAATTTGATGAAACACAAAAATTGATTGGCTCTATGATTCTCACCGGAGCCGCTTCAAC 66
Query 55 ATTTCTCATCGCCGCTCGAGTTTTTAAGGCTATGAATCGCCGAATGTATGCTGCTGCTAC 114
||||| ||||| |||||||||||| || |||||||||||||| |||||||||||| ||||
Sbjct 67 ATTTCCCATCGTCGCTCGAGTTTTGAACGCTATGAATCGCCGTATGTATGCTGCTACTAC 126
Query 115 TCTATCATCTGCCAAATCCCTCTCCGCAGAATCCCTAAATCCTCGTCCGGATTCCAATTT 174
|||||||||||||||||| |||| ||||||||||||||| || | | | |||| |||
Sbjct 127 TCTATCATCTGCCAAATCAATCTCTGCAGAATCCCTAAAT-CT--T-C-G-TTCCGATTC 180
Query 175 CAATTCAGGA-GCAGC-CATTGGAACTTCTGAGTCTGAGACTCGAGTCTCTTTAAGGAAG 232
||||||| || ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CAATTCA-GAGGCAGCGCA-TGGTGCTTCTGAGTCTGAGACTCGAGTCTCTTTAAGGAAG 238
Query 233 AAAAGGCTAAAGCAGGAAGCTTTAGAGCCTGTGCAGCAATGTTCCAG-CAGAGGAATCAA 291
|| ||| |||||||||| | ||| |||||||| || |||||||| | ||||| || |||
Sbjct 239 AAGAGGATAAAGCAGGATGATTTGGAGCCTGTAAAGAAATGTTCC-GCCAGAGAAACCAA 297
Query 292 TGCCCGCAAGGAGATGTGTGGATTACCTGATATAGAAGACTCTCCTTACAAGAAGACTAA 351
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GGCCCGCAAGGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAA 357
Query 352 TGGATCTGCGTCATCTAGGACGTCAAAAATAAACTCATTTATAAAATCAACAGAAGCTA- 410
|||| |||| |||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 358 TGGAACTGCTTCATCTAGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAG 417
Query 411 -------GCA-CTTCGATC-AAA-A-CA--GC-AGGCATACCACCTGAAAACTGGAAAAA 456
||| | |||||| ||| | || || |||||||||||||||||||||| ||||
Sbjct 418 CCCTTCTGCATCGTCGATCAAAACAGCAGGGCTAGGCATACCACCTGAAAACTGGGAAAA 477
Query 457 AGTGCTCGAGGGTATTCAAAAAATGAAATCTTCAGAAGTAGCACCGGCTAATGCTGTAGA 516
|||||||||||||||| |||||||||| ||||||||| |||||| | ||||||||||||
Sbjct 478 GGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGA 537
Query 517 ACGTAATAGAACCGGAAGCTTTTTACCTCCAAAGGAAAGGCGATTTTATGTGCTCATAGG 576
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATGTGATAGAACCGGAAGCTTTTTACCTCCAAAGGAAAGGCGATTTTATGTGCTCATAGG 597
Query 577 AACACTTCTTTCAAGTCAGACTAAAGAGCACATAACTGGTGCGGCAGTAGAACGACTTCA 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AACACTTCTTTCAAGTCAGACTAAAGAGCACATAACTGGTGCGGCAGTAGAACGACTTCA 657
Query 637 TCAAAATGGCCTTCTCACTCCTGAAGCCATTGACAAAGCCGATGAATCAACCATTAAGGA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCAAAATGGCCTTCTCACTCCTGAAGCCATTGACAAAGCCGATGAATCAACCATTAAGGA 717
Query 697 ATTGATCTATCCGGTTGGATTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCAAA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTGATCTATCCGGTTGGATTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCAAA 777
Query 757 AATATGTCTAATGAAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTCTCACT 816
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 AATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACT 837
Query 817 TCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATGTAGCCTGGAATGATGTTCA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATGTAGCCTGGAATGATGTTCA 897
Query 877 AGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAA 957
Query 937 ACCAGGAACAAAACAGAAAACCTTGTCCCCTGAGGAAACTAGGGTAGCTCTGCAACAATG 996
||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 958 ACCTGGAACGAAACAGAAAACCTCGTCCCCTGAGGAAACTAGAGTAGCTCTGCAACAATG 1017
Query 997 GCTTCCAAAAGAAGAATGGGTGGCTATTAACTTTCTGTTGGTAGGTTTTGGACAAACGAT 1056
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 GCTTCCAAAAGGAGAATGGGTGGCTATAAACTTTCTGTTGGTAGGTTTTGGACAAACGAT 1077
Query 1057 CTGCACACCGCTAAGACCACGCTGTGGAACTTGTAGTATCGCTGAGCTCTGCCCTTCTGC 1116
||||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||
Sbjct 1078 ATGCACACCGCTAAGACCACACTGTGGAACTTGTAGTATTACTGAGATTTGCCCTTCTGC 1137
Query 1117 CTTTAAGGAGACTCCGAGCACATCATCCAAATTGAAGAAATCTATCAAAAGCAAGAAACT 1176
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 CTTCAAGGAGACCCCGAGCACATCATCCAAATTGAAGAAATCTATCAAAAGCAAGAAGCT 1197
Query 1177 TTAGTTGCTTTGGCTCTGGATTACTCCTTCTAGATCATTTTTTAACCCATTTTGTGATTA 1236
|||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||
Sbjct 1198 TTAGTTGCTTTGGCTCTGGATT-CTCCTTCTAGATCATTGTTAAACCCATTTTTTGATTA 1256
Query 1237 GTTAGTCCTCGGTAAAAGTTAAATTGTACCCAAGAAATTGTATAGCTTTACGGGGAATGC 1296
|| ||||||| |||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 1257 GT----CCTCGGTTAAAGTTAAATTGTATCCAAGATATTGTATAGCTTTATGGGGAATGC 1312
Query 1297 AAGAGCATCCCACTTGT 1313
|||||||||||||||||
Sbjct 1313 AAGAGCATCCCACTTGT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5