BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470610
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05970.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 924 0.0
> AT1G05970.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:1816056-1817282 REVERSE LENGTH=857
Length=857
Score = 924 bits (500), Expect = 0.0
Identities = 620/679 (91%), Gaps = 4/679 (1%)
Strand=Plus/Plus
Query 1 GTTTAGTGATGGCTACTCCGGAAGAA-TCAGCGTATGACAAGTTTCTAGAGAGAGTTCGC 59
||| ||||||||| |||||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct 50 GTTCAGTGATGGCGACTCCGGAAGAAGT-AGCGTATGAGAAGTTCCTAGAGAGAGTTCGT 108
Query 60 CGTACTGTGTATATAGACGAACTCACGCCTCTTGCCACAACTCCGGTTATTGAATCTGCT 119
|||||||| || |||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 109 CGTACTGTCTACGTAGACGAACTCACGCCTCTTGCCACAGCTCCTGTTATTTCATCTGCT 168
Query 120 TTCAATCAGTTTGGGACTGTCAAGAAAGTCAGCTTCATACCAAACTTCTTGGGTCCAAAG 179
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 169 TTCAATCAGTTTGGGACTGTCAAGAAAGTCAGCTTCATACCTAACTACTTGGGTCCAAAG 228
Query 180 GAGCTTCCTATGAGTGTTCTCGTTGAGATGGAGACTGAAGATATGGCACAAGCTGTTATC 239
|||||||||||| ||||||| ||||||||||||| |||||| ||| |||| |||||||||
Sbjct 229 GAGCTTCCTATGGGTGTTCTTGTTGAGATGGAGAATGAAGAGATGACACAGGCTGTTATC 288
Query 240 TCCACTGTCTCACAGTTACCTTTTATGGTTGCTGGAATGCCCAGGCCTGTCAGAGCTAGT 299
|| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| ||
Sbjct 289 TCTACTGTCTCACAGTTACCTTTCATGGTTGCTGGTATGCCAAGGCCTGTGAGAGCTTGT 348
Query 300 GCTGCTGAGCCTAATATGTTTGTGGATCGACCGAAGAAGCCTGGTAGAACCATCCGTTTT 359
||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 349 GCTGCTGAGCCTAATATGTTTGTTGATAAACCGAAGAAGCCTGGTAGAACGGTCCGTTTT 408
Query 360 CGCTGGATTGGGCCTAACGATCCTGATTTCGACAAGGCCAGGAGAATGAAGAGGCTTGCT 419
||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 409 CGCTGGATTAAGCCTAACGATCCTGATTTCGACAAGGCCAGGAGAGTCAAGCGGCTTGCT 468
Query 420 CGTAAGCATACTGCTGAAAATTCGTTCATGCTCAAGAAACAGCTTGAGGAGGCAGAAAAA 479
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 469 CGTAAGCATAGTGCTGAAAATTCGTTCATGCTCAAGAAACAGCTTGAGGAGGCAGAGAAG 528
Query 480 CTGTCCAAGCAGCAATCTGAGACGGCCTTAACACATCATAAGAAGTTTGAGATGATGGAT 539
||||| || |||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 529 CTGTCGAAACAGCAAGCTGAGACGGCGGTAACACATCACAAGAAGTTTGAGATGATGGAT 588
Query 540 AAACTCCTCTACGATGGCGTTGCTCAGAAACTGGCTGACCGTTAC-AGCATGAAATGTTT 598
||||||||||||||||| ||||||||||||||||||| ||||||| | | ||||| ||||
Sbjct 589 AAACTCCTCTACGATGGTGTTGCTCAGAAACTGGCTGGCCGTTACGACC-TGAAAGGTTT 647
Query 599 TCCTTATCGCTAGAGAGACACACCATATGGTATTTTGCTTAGAACTTGCTTATGCCACTA 658
||||||||| |||||||| || |||||||||||||||||||||||| |||||| |||||
Sbjct 648 TCCTTATCGGTAGAGAGAGACTGCATATGGTATTTTGCTTAGAACTTCCTTATGTCACTA 707
Query 659 GTTTGTGCAGTGTCTATTT 677
|||||||||||||||||||
Sbjct 708 GTTTGTGCAGTGTCTATTT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5