BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470615
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1509 0.0
AT1G06020.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1262 0.0
AT1G50390.1 | Symbols: | pfkB-like carbohydrate kinase family ... 449 2e-125
> AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:1826880-1828161 FORWARD LENGTH=1021
Length=1021
Score = 1509 bits (817), Expect = 0.0
Identities = 939/998 (94%), Gaps = 7/998 (1%)
Strand=Plus/Plus
Query 20 CATCCACCGGCG---ATAAAGGTCTCGTCGTGAGCTTCGGCGAGATGCTCATTGACTTCG 76
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 8 CATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTCG 67
Query 77 TCCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCCGGATTTCTCAAAGCTCCCGGTG 136
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 68 TGCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGGTG 127
Query 137 GTGCTCCGGCCAACGTCGCCATCGCCGTCTCACGTCTCGGAGGTCGCGCTGCCTTCGTAG 196
||||||| || |||||||| ||||| || || ||||||||||||||||| |||||||| |
Sbjct 128 GTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGTCG 187
Query 197 GAAAACTCGGGGATGATGA-TTTCGGCCATATGCTTGCCGGAATCTTGAGAAAGAACGGT 255
||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 188 GAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACGAT 246
Query 256 GTCGACGATCAGGCGATCAATTTCGATAGAGGAGCAAGAACCGCACTCGCTTTTGTGACT 315
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 247 GTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGACT 306
Query 316 CTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTT 375
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 307 CTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTT 366
Query 376 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTCCACTATGGA 435
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 367 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATGGA 426
Query 436 TCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCG 495
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 427 TCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGGCG 486
Query 496 AAAGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTGAGGGAACCTCTTTGGCCATCC 555
|||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 487 AAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCATCC 546
Query 556 CCTGATGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGATATCATTAAGGTC 615
||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 547 CCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGGTC 606
Query 616 AGTGACGTCGAGCTTGAGTTCTTGACCGGAAACAAAACGATCGATGATGAGATAGCTATG 675
|||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 607 AGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTATG 666
Query 676 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGTCGT 735
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 667 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGTCGT 726
Query 736 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACT 795
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 727 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTGTGGATACT 786
Query 796 ACGGGAGCTGGTGATTCTTTCGTTGGCGCGCTTCTAAACCAGATTGTGGATGATCACTCT 855
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 787 ACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCAATCT 846
Query 856 GTACTTGAGGAGGAAGAGAGATTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAGCC 915
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 847 GTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGGAGCA 906
Query 916 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTTCAGATTGTGAAGCTCTCAGT 975
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 907 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCTCAGT 966
Query 976 TTTCTTAAGAGACAAATAGAA-ACGTAAAACTTATCTT 1012
|||||||||| |||| ||||| | ||||||||| ||||
Sbjct 967 TTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003
> AT1G06020.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:1824548-1826101 FORWARD LENGTH=1038
Length=1038
Score = 1262 bits (683), Expect = 0.0
Identities = 898/1001 (90%), Gaps = 17/1001 (2%)
Strand=Plus/Plus
Query 20 CATCCACCGGCGATAAAGGTCTCGTCGTGAGCTTCGGCGAGATGCTCATTGACTTCGTCC 79
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 8 CATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGACTTCGTCC 67
Query 80 CCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCCGGATTTCTCAAAGCTCCCGGTGGTG 139
| || | |||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 68 CTACCGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAAGCTCCCGGCGGTG 127
Query 140 CTCCGGCCAACGTCGCCATCGCCGTCTCACGTCTCGGAGGTCGCGCTGCCTTCGTAGGAA 199
|||||||||||||||||||||| || |||||||| |||||||| || |||||||| || |
Sbjct 128 CTCCGGCCAACGTCGCCATCGCTGTTTCACGTCTTGGAGGTCGTGCCGCCTTCGTTGGGA 187
Query 200 AACTCGGG-GATGATGATTTCGGCCATATGCTTGCCGGAATCTTGAGAAAGAACGGTGTC 258
| || ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 188 AGCT-GGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAACGGTGTC 246
Query 259 GACGATCAGGCGATCAATTTCGATAG-AGGAGCAAGAACCGCACTCGCTTTTGTGACTCT 317
|||||||||| |||||||||||| | ||| || ||||| |||||||||||||| ||| |
Sbjct 247 GACGATCAGGGGATCAATTTCGA-CGAAGGGGCGAGAACTGCACTCGCTTTTGTCACTTT 305
Query 318 GCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTTCT 377
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 306 GCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTTCT 365
Query 378 CCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTCCACTATGGATC 437
||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 366 CCGGCCAGATGAACTGAATCTTGAACTTATCAGATCCGCGAAAGTGTTCCACTATGGATC 425
Query 438 AATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCGAA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCGAA 485
Query 498 AGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTGAGGGAACCTCTTTGGCCATCCCC 557
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 486 AGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTTTGGCCATCACC 545
Query 558 TGATGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGATATCATTAAGGTCAG 617
||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 546 TGAAGAAGCTAGGACACAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAGGTCAG 605
Query 618 TGACGTCGAGCTTGAGTTCTTGACCGGAAACAAAACGATCGATGATGAGATAGCTATGTC 677
|||||| |||||||| |||||||||| ||||||||| || |||||| ||| ||| |||||
Sbjct 606 TGACGTGGAGCTTGAATTCTTGACCGAAAACAAAACCATGGATGATAAGACAGCAATGTC 665
Query 678 TCTGTGGCATCCTAAT-TTGAAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGT-CGT 735
||| |||||||| || || ||||||||||||||||| || || ||||| |||||| | |
Sbjct 666 TCTATGGCATCCCAACCTT-AAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGTAC-T 723
Query 736 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACT 795
|| | ||| ||| | ||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 724 TATTTCACAAAGAAATTCCATGGATCGGTAGAAACATTCCATGTGGACGCCGTGGATACT 783
Query 796 ACGGGAGCTGGTGATTC-TTTCGTTGGCGCGCTTCTA-AACCAGATTGTGGATGATCACT 853
|| |||||||| ||||| ||| ||||| || |||||| ||| ||||||| ||||| || |
Sbjct 784 ACCGGAGCTGGAGATTCGTTT-GTTGGTGCACTTCTACAAC-AGATTGTTGATGACCAGT 841
Query 854 CTGTACTTGAGGAGGAAGAGAGATTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAG 913
| ||||| ||||| |||| ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 842 CCGTACTCGAGGATGAAGCGAGGTTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGGAG 901
Query 914 CCATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTTCAGAT-TGTGAAGCTCTC 972
||||||| || |||||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct 902 CCATCACAACAACTAAAAAAGGAGCCATTCCAGCTCTTCCTACAGACAT-TGAAGCTCTC 960
Query 973 AGTTTTCTTAAGAGAC-AAATAGAAACGTAAAACTTATCTT 1012
||||||||||| |||| ||| |||||||| |||| |||||
Sbjct 961 AGTTTTCTTAA-AGACCAAA-AGAAACGTCAAACCAATCTT 999
> AT1G50390.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:18666986-18667677 REVERSE LENGTH=441
Length=441
Score = 449 bits (243), Expect = 2e-125
Identities = 281/300 (94%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 697 AAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGTCGTTACTACACTAAGGATTTCCAT 756
|||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 136 AAGCTCTTACTTGTTACTCTCGGTGAAAAGGGATGTCGTTACTACACTAAGGATTTCCAT 195
Query 757 GGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACTACGGGAGCTGGTGATTCTTTC 816
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 196 GGATCTGTTGAAACTTTCCATGTTGACGCTGTGGATACTACTGGAGCTGGTGATTCTTTT 255
Query 817 GTTGGCGCGCTTCTAAACCAGATTGTGGATGATCACTCTGTACTTGAGGAGGAAGAGAGA 876
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 256 GTTGGCGCGCTTCTAAACCAGATTGTTGATGATCAATCTGTACTCGAGGAGGAAGAGAGA 315
Query 877 TTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAGCCATCACGACGACTAAAAAGGGA 936
|||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 316 TTGAGAAAAGTGCTTAGAATTGCAAATGCTTGTGGAGCAATCACGACGACTAAAAAGGGA 375
Query 937 GCCATTCCAGCTCTTCCTTCAGATTGTGAAGCTCTCAGTTTTCTTAAGAGACAAATAGAA 996
|||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||
Sbjct 376 GCCATTCCTGCTCTTCCTACAGATTGTGAAGCTCTCAGCTTTCTTAAGAGACAAGTAGAA 435
Score = 200 bits (108), Expect = 2e-50
Identities = 128/138 (93%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 475 ATGAAGGCAATGGAAGTGGCGAAAGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTG 534
|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGAAGGCAACGGAAGAGGCGAAAGAAGCCGGAGCTCTTCTTTCCTACGATCCAAATCTC 60
Query 535 AGGGAACCTCTTTGGCCATCCCCTGATGAAGCTCGGACTCAGATCATGAGTATCTGGGAC 594
|||||||||||||||||||| ||||| |||||| |||||||||||||||| || ||||||
Sbjct 61 AGGGAACCTCTTTGGCCATCACCTGAAGAAGCTAGGACTCAGATCATGAGCATATGGGAC 120
Query 595 AAGGCTGATATCATTAAG 612
||||||||||||||||||
Sbjct 121 AAGGCTGATATCATTAAG 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5