BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470618
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06060.1 | Symbols: | LisH and RanBPM domains containing pr... 1482 0.0
> AT1G06060.1 | Symbols: | LisH and RanBPM domains containing
protein | chr1:1832943-1834861 FORWARD LENGTH=1115
Length=1115
Score = 1482 bits (802), Expect = 0.0
Identities = 998/1088 (92%), Gaps = 32/1088 (3%)
Strand=Plus/Plus
Query 20 GACTCAAACCTCACCGAATTTTGGCCATCTCATCTGGCTTCTTCCCCTCCGGC----G-- 73
|||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct 29 GACTCACACCTCATCGAAATTTGGCCATCTCATCTGGCTTCTTCCCCTCCGGCGTTGGAT 88
Query 74 --------TTACTTCTCGCACCGGCGTCTAGTGGAACAATATGGATCCTCGTCAATTCGC 125
||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 89 AACCATCATTACTTCTCGCGCCGGCTTCGAGTGGAACAATATGGATCCTCGTCAATTCGA 148
Query 126 ACACACCGTTGTTGATGATAATGACATTCACAGCATTGTAATGTCATATCTTCTGCACAA 185
|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 149 ACACACCGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAA 208
Query 186 CTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTGCACTGGAGTTAAGCAACCCGCAAT 245
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 209 CTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTAAGCAGCCTGCAAT 268
Query 246 TGATCGTGATAACTTGGAGAGAAGAAAACAAATAATACATTTTATACTGGAGAGGAAAGC 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 TGATCGTGATAACATGGAGAGAAGAAAACAAATAATACATTTTATACTGGAGAGGAAGGC 328
Query 306 GTTGAAGGCTGTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGA 365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GTTGAAGGCTTTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGA 388
Query 366 TTTGCACTTCGATCTTCTATGCCTTCATTTTGTCGACCGAGTCTGTGCTGGGAACTGCAC 425
|||||| |||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct 389 TTTGCAATTCGATCTTCTATGCCTTCATTTTGTGGAGCTAATCTGTGCTGGGAACTGCAC 448
Query 426 AGAAGCTCTTGAATTTGCTCAGACGAGATTGGCTCCTTTTGGGAAGGTCCCAAAATATGT 485
|||||||| |||||| | |||| |||||||||||||||||||||||| |||||||||
Sbjct 449 CGAAGCTCTCAAATTTGGTAAGACAAGATTGGCTCCTTTTGGGAAGGTCAAAAAATATGT 508
Query 486 AGAAAAGCTTGAAGACGTAATGGCATTGCTGGCTTATGAAGACCCTGAGAAATCCCCAAT 545
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 509 AGAAAAGCTTGAAGACGTAATGGCATTGCTCGCTTATGAAGACCCTGAGAAATCCCCAAT 568
Query 546 GTTCCATCTTTTGAGCTCTGAATACCGACAACAGGTTGCTGATAATCTGAACCGTACGAT 605
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 569 GTTCCATCTTTTGAGCTCTGAATACCGCCAACAAGTTGCTGATAATCTGAACCGCACAAT 628
Query 606 TCTTGAACACACAAACCACCCAAGCTACACACCAATGGAAAGGATCATACAACAGGTGAC 665
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 629 TCTTGAACACACAAACCACCCGAGCTACACACCAATGGAAAGGATCATACAACAGGTGAC 688
Query 666 AGTTGTGAGACAATACTTGACTGAGGAGAATGGCAAAGATGCGTTTCCTCCATTTTCTCT 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 689 AGTTGTGAGACAATACTTGACTGAGGAGAATGGCAAAGATGCGTTTCCTCCATTCTCTCT 748
Query 726 CAAGGATTCTCTCAAAGGCTAAGATCGCAGGACTACTCCAAAGTTTGCTAGGAGGAGGAT 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 GAAGGATTCTCTCAAAGGCTAAGATCGCAGGACTACTCCAAAGTTTGCTAGGAGGAGGAT 808
Query 786 ATGCTAAGCATTGTCATGTAAATACaaaaaaaaaCCTTGCTCATCTCC----TTTGTACA 841
|||||||||||||||||||||||||||||| | |||||||| |||| |||| ||
Sbjct 809 ATGCTAAGCATTGTCATGTAAATACAAAAAGA--CCTTGCTCCTCTCTAAAGTTTG--CA 864
Query 842 AGGTTATTCTTCCATGGCCACAGAAGGGATTTCGGTTTGCTGTTGCAAGAGATCGATATT 901
|||||| |||||||||||||||| ||| |||| |||||||||| || |||||| |||||
Sbjct 865 AGGTTAGTCTTCCATGGCCACAGGCGGGGTTTCAGTTTGCTGTTACAGGAGATCAATATT 924
Query 902 GTGAAGGACAGTTTCGGCTTGGTTTGGTTTGGTTCGGTTCAGTTCTCTACCAGAA-ATTG 960
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 925 GTGAAGGACAGTTTCGGCTTGGTTTGGTTTGGTTTGGTTCAGTTCTCTACCAGAAGATTG 984
Query 961 TTCCCTCAACTTTGTGTGAGTTTAG-CGATAAATCTGTAATCCATATCCTTGGAA-ACA- 1017
|| | |||||||||||||||||||| |||||||||||||||||||||| |||||| |||
Sbjct 985 TTTCATCAACTTTGTGTGAGTTTAGTCGATAAATCTGTAATCCATATCTTTGGAATACAC 1044
Query 1018 ATTTCTCTTTGTAACTATCTTTTATTTATGCTTTGATATAGAACAATCGCAAATTCAAAG 1077
||||||||||||||||||| ||||| | | || |||| ||| | | |||||||||| |
Sbjct 1045 ATTTCTCTTTGTAACTATCGTTTATGT-T--TT-GATA--GAATACTTGCAAATTCAAGG 1098
Query 1078 TTTTATTT 1085
||||||||
Sbjct 1099 TTTTATTT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53162377155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5