BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470629
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2621 0.0
> AT1G06140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:1864796-1866472 FORWARD LENGTH=1677
Length=1677
Score = 2621 bits (1419), Expect = 0.0
Identities = 1593/1679 (95%), Gaps = 4/1679 (0%)
Strand=Plus/Plus
Query 1 ATGCTTCCGGTGAACAGAAACAGAGCTCTTTTAACAATCTTGAGCCAAACCAAAACACTA 60
|||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 ATGCTTCCGGTGAACAGAGCCAGAGCTCTTTTAACAATCCTGAGCCAAGCCAAAACACTA 60
Query 61 CACCATACTCAGCAAGTTCACGCCAAGGTCATAATCCATGGATTCCAAGATGAAGTTGTT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AACCATACTCAGCAAGTTCACGCCAAGGTCATAATCCATGGATTCGAAGATGAAGTTGTT 120
Query 121 CTCGGATCCAGTCTCACTAACGCTTATATCCAATCGAATCGTCTCGATTTCGCTACTGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CTCGGATCCAGTCTCACTAACGCTTATATCCAATCGAATCGTCTCGATTTCGCTACTTCT 180
Query 181 TCATTCGATCGAATCCCTTGTTGGAAGAGGAATCGGCATTCGTGGAACACGATTCTCTCT 240
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 TCTTTCAATCGAATCCCTTGTTGGAAGAGGAATCGCCATTCGTGGAACACGATTCTCTCT 240
Query 241 GGTTACTCCAAATCCAAGAGTTGTTATTATAGCGACGTCTTGCTTCTTTACAATCGCATG 300
||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 241 GGTTACTCCAAATCCAAGACTTGTTGTTATAGTGACGTCTTGCTTCTTTACAATCGCATG 300
Query 301 AGAAGGCATTGTGATGGCGTCGATAGTTTCAATTTGGTATTTGCGATCAAAGCTTGTGTT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAGGCATTGTGATGGCGTTGATAGTTTCAATTTGGTATTTGCGATCAAAGCTTGTGTT 360
Query 361 GGTTTAGGGCTTTTAGAAAATGGTATGCTGATTCATGGCTTGGCGATGAAGAATGGGTTG 420
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 361 GGTTTAGGGCTTTTAGAAAATGGGATTCTGATTCATGGCTTGGCTATGAAGAATGGGTTG 420
Query 421 GATAAAGATGATTATGTTGCTCCGTCGTTGGTTGAGATGTACGCACAGTTCGGTACTATG 480
||||| |||||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 421 GATAAGGATGATTACGTTGCTCCGTCGTTGGTTGAGATGTATGCACAATTAGGTACTATG 480
Query 481 GAAAGTGCGCAGAAGGTGTTCGACGAAATTCCTGTGAGAAATTCAGTTCTTTGGGGAGTT 540
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 481 GAAAGTGCGCAGAAAGTGTTCGACGAAATTCCTGTCAGAAACTCAGTTCTTTGGGGAGTT 540
Query 541 CTGATGAAAGGATATTTGAAATACTCGAAAGACTCAGAAGTGTTTCGTTTGTTTTATCTC 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 541 CTGATGAAAGGATATTTGAAATACTCGAAAGACCCAGAAGTGTTTCGTTTGTTTTGTCTC 600
Query 601 ATGAGAGACACTGGTTTAGCGCTCGATGCGCTTACGTTGATATGTTTGGTAAAGGCTTGT 660
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 601 ATGAGAGATACTGGTTTAGCCCTCGATGCGCTTACCTTGATATGTTTGGTAAAGGCTTGT 660
Query 661 GGGAATGTTTTTGCTGCTAAAGAAGGAAAGTGTGTGCACGGATTATCCATTAGAAGGAGC 720
|| ||||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||||
Sbjct 661 GGAAATGTTTTTGCTGGTAAAGTAGGGAAGTGTGTGCATGGAGTATCCATTAGAAGGAGC 720
Query 721 TTCATAGATCAGAGTGGTTACTTAGAAGCCTCCATCATAGATATGTATGTGAAATGTAGA 780
|| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 721 TTTATAGATCAGAGTGATTACTTACAAGCCTCCATTATAGATATGTATGTGAAATGTAGA 780
Query 781 TTGTTGGACAATGCTCGAAAACTATTTGAAACAAGTGTTGAAAGGAATGTGGTGATGTGG 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 781 TTGTTGGACAATGCTCGAAAACTATTTGAAACAAGTGTTGATAGGAATGTGGTAATGTGG 840
Query 841 ACTACGCTGATTTCTGGGTTTGCAAAGTGTGAGAGAGCTGTTGAAGCAATTGATCTATTC 900
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 841 ACTACGCTGATTTCTGGGTTTGCAAAGTGTGAGAGAGCTGTTGAAGCATTTGATCTGTTC 900
Query 901 AGGCAGATGCTAGGAGAATCGATACTTCCAAATCATTGTACTTTGGCGGCCATTCTTGTT 960
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AGGCAGATGCTACGAGAATCGATACTTCCAAATCAATGTACTTTGGCGGCCATTCTTGTT 960
Query 961 TCTTGCTCGAGCTTGGGATCTCTGAGGCACGGGAAAAGTGTTCATGGCTACATGATAAGG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTTGCTCGAGCTTGGGATCTCTGAGGCACGGGAAAAGTGTTCATGGCTACATGATAAGG 1020
Query 1021 AACGGGATTGAAATGGACGCCGTGAATTTCACATCTTTCATCGATACATATGCTAGATGC 1080
|| |||||||||||||| || || ||||| ||||| |||||||||| ||||||||||||
Sbjct 1021 AATGGGATTGAAATGGATGCTGTAAATTTTACATCGTTCATCGATATGTATGCTAGATGC 1080
Query 1081 GGGAATATACAGATAGCTCGGAAGGTTTTCGACATGATGCC-GAAGAGAAATGTGATATC 1139
|| ||||||||||| ||||||| |||||| || |||||||| || |||||||||||||||
Sbjct 1081 GGAAATATACAGATGGCTCGGACGGTTTTTGATATGATGCCAGA-GAGAAATGTGATATC 1139
Query 1140 TTGGAGCTCAATGATCAATGCTTTTGGGAGAAATGGTCTGTTCGAGGAAGCTCTGGATTG 1199
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 TTGGAGCTCGATGATCAATGCTTTTGGGATAAATGGTCTGTTCGAGGAAGCTCTGGATTG 1199
Query 1200 TTTTGATAACATGAAGTCACAAAACCTAGTTCCCAATTCTGTGACATTTGTTTCGCTTTT 1259
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1200 TTTTCATAAAATGAAGTCACAAAACGTAGTTCCCAATTCTGTGACATTTGTTTCGCTTTT 1259
Query 1260 GTCGGCCTGTAGCCATTCGGGAAACGTCAAAGAAGGATGGAAGCAATTTGAATCGATGAC 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTCGGCCTGTAGCCATTCCGGAAACGTCAAAGAAGGATGGAAGCAATTTGAATCGATGAC 1319
Query 1320 AAGAGACTACGGGCTAGTGCCAGAGGAAGAACATTACGCGTGTATGGTAGATTTGCTAGG 1379
||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1320 AAGAGACTATGGGGTAGTGCCGGAGGAAGAACATTACGCGTGTATGGTGGATTTGCTAGG 1379
Query 1380 TCGAGCTGGTGAAATTGGAGAAGCTAAGTCGTTCATTGACAACATGCCTGTGAAACCAAT 1439
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1380 TCGAGCTGGTGAGATTGGAGAAGCTAAGTCTTTCATTGACAACATGCCTGTGAAACCAAT 1439
Query 1440 GGCCAGTGCTTGGGGAGCTCTTTTGAGTGCTTGTAGAATCCATAAAGAAGTTGACTTAGC 1499
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1440 GGCCAGTGCTTGGGGAGCTCTTCTGAGTGCTTGTAGAATCCATAAAGAAGTCGACTTAGC 1499
Query 1500 AGGAGAAGTCGCAGAGAAGCTCTTATCCATGGAACCCGATGAA-TCAAGTGTCTATGTTT 1558
||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 1500 AGGAGAAATCGCAGAGAAGCTCTTATCCATGGAACCCGA-GAAATCAAGTGTCTACGTTT 1558
Query 1559 TGCTTTCTAACATATATGCTGATGCTGGGATGTGGGAGATGGTGAATTGTGTGAGACGTA 1618
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1559 TGCTTTCTAACATATACGCTGATGCTGGGATGTGGGAGATGGTGAATTGTGTGAGACGGA 1618
Query 1619 AAATGGGTATCAAAGGATATAGAAAACCTATGGGACTATCTGCTACTGAAGTTGGCTAG 1677
||||||| ||||||||||||||||||| | |||||| ||||||||||||||| ||||||
Sbjct 1619 AAATGGGGATCAAAGGATATAGAAAACATGTGGGACAATCTGCTACTGAAGTCGGCTAG 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5