BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470633
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06160.1 | Symbols: ORA59 | octadecanoid-responsive Arabidop... 1206 0.0
> AT1G06160.1 | Symbols: ORA59 | octadecanoid-responsive Arabidopsis
AP2/ERF 59 | chr1:1883004-1883934 FORWARD LENGTH=931
Length=931
Score = 1206 bits (653), Expect = 0.0
Identities = 810/879 (92%), Gaps = 37/879 (4%)
Strand=Plus/Plus
Query 1 AATAAGAAAACCGTTAAGAAGAAAGaaaaaaaGAAGATTGAAAATGGAATATCAAAATAC 60
||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||
Sbjct 1 AATAAGAAAACCGTTAACAAG-AAGAAAAAAAAAAGATCGAAAATGGAATATCAAACTAA 59
Query 61 CTTCTTAAGTAAAGAGTTCTCCGGGGAGAACTCTTCTTCAAGCTCATGGAGCTCACAAGA 120
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCTTAAGTGGAGAGTTTTCCCCGGAGAACTCTTCTTCAAGCTCATGGAGCTCACAAGA 119
Query 121 ATCATTCTTGTGGGAAGATAGTTTCTTACATCAATCATTTGATCAATCCTTCCTTTTATC 180
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 ATCATTCTTGTGGGAAGAGAGTTTCTTACATCAATCATTTGACCAATCCTTCCTTTTATC 179
Query 181 TACCCCTACT--T-ACTACTCTGATGACTTCTTTGCATTTGAACCACCAATCATCAAAGA 237
|| ||||||| | |||||| |||||||||||||||||||||| || ||||||| |||||
Sbjct 180 TAGCCCTACTGATAACTACTGTGATGACTTCTTTGCATTTGAATCATCAATCATAAAAGA 239
Query 238 AGAA-G--AAGAAGCCACCGTGGCGGCCGAGGAGGAGGAGAAGTCATACAGAGGAGTGAG 294
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGAAGGAAAAGAAGCCACCGTGGCGGCCGAGGAGGAGGAGAAGTCATACAGAGGAGTGAG 299
Query 295 GAAACGGCCGTGGGGGAAGTAT-GCGGCCGAGATAAGAGATTCAACGAGGAAAGGGATAA 353
|||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||
Sbjct 300 GAAACGGCCGTGGGGGAAAT-TCGCGGCCGAGATAAGAGACTCAACGAGGAAAGGGATAA 358
Query 354 GAGTGTGGCTAGGGACATTCGACACCGCGGAGGAGGCGGCTCTCGCTTATGACCAGGCGG 413
|||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 359 GAGTGTGGCTTGGGACATTCGACACCGCGGAGGCGGCGGCTCTCGCTTATGATCAGGCGG 418
Query 414 CTTTCGCTTTGAAAGGCAGCCTCGCAGTACTCAATTTCCCCGTGGATGTCGTTGAAGAGT 473
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 419 CTTTCGCTTTGAAAGGCAGCCTCGCAGTACTCAATTTCCCCGCGGATGTCGTTGAAGAAT 478
Query 474 CTCTCCGGAAGATGGAGAATGTGAATCTCAACGATGGAGAGTCTCCGGTGATTGCCTTGA 533
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 479 CTCTCCGGAAGATGGAGAATGTGAATCTCAATGATGGAGAGTCTCCGGTGATAGCCTTGA 538
Query 534 AGAGAAAACACTCCATGAGAAACCGTCCTAGAGGAAAGAAGAAAtcttcttcttcttcga 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGAGAAAACACTCCATGAGAAACCGTCCTAGAGGAAAGAAGAAATCTTCTTCTTCTTCGA 598
Query 594 cgttgacatcttctccttcttcctcct------a--c-tcgtc--c-tcttcttctt-T- 639
||||||||||||||||||||||||||| | | || || | |||||||||| |
Sbjct 599 CGTTGACATCTTCTCCTTCTTCCTCCTCCTCCTATTCATCTTCTTCGTCTTCTTCTTCTT 658
Query 640 -GTCGTCAAGAGGTAGAAAACAGAGTGTTGTTATGACGCAAGAAAGTAATACAACACTTG 698
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGTCGTCAAGAAGTAGAAAACAGAGTGTTGTTATGACGCAAGAAAGTAATACAACACTTG 718
Query 699 TGGTTCTTGAGGATTTAGGTGCTGAATACTTAGAAGAGCTTATGAGATCATGTTCATGAT 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 TGGTTCTTGAGGATTTAGGTGCTGAATACTTAGAAGAGCTTATGAGATCATGTTCTTGAT 778
Query 759 CATCTCTACTTCTACAATTTTTATGTAATTTAATTTGAGTGAGCTCTGGTTTGTTTTTA- 817
|||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |
Sbjct 779 AATCTCTGCTTCTACAATTTTTATGTAATTT-----GAGTGAGCTCTG-TTT-TTTTAAG 831
Query 818 A-----TCCGTTGAAAAGTTTTGGAAGAGATGTGATGGC 851
| |||||||||||||||||||||||||||||||||
Sbjct 832 AAAAAATCCGTTGAAAAGTTTTGGAAGAGATGTGATGGC 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5