BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470644
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06240.1 | Symbols: | Protein of unknown function DUF455 | ... 1611 0.0
> AT1G06240.1 | Symbols: | Protein of unknown function DUF455
| chr1:1911122-1913205 FORWARD LENGTH=1526
Length=1526
Score = 1611 bits (872), Expect = 0.0
Identities = 1078/1168 (92%), Gaps = 52/1168 (4%)
Strand=Plus/Plus
Query 66 TTCCTCGACGAAGCAACAACACAAGCTTTGGTCTGGTCTCGACAACTGGAGAAAGAGTCC 125
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 125 TTCTTCGACGAAGCAACAACACAAGCTTTGGTCTGGTCTCGAAAACTGGAGAAAGAGTCC 184
Query 126 TGTCAATGACCTCCGTCTCTGGGGTCCTACTGGTCCTCTCCTT-C--CTTCTTCTGACTC 182
|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 185 TGTCAACGACCTCCGTCTCTGGGGTCCTACTGGTCCTCTCCTTCCTTCTTCTTCTGACTC 244
Query 183 CATCTCC-CCAGGCTTCTACGGTCTCGTCTCGGCGGCGtcttctctcgctgatctcggag 241
||||||| || | |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 245 CATCTCCGCC-GACTTCTACGGTCTCGTCTCAGCTGCATCTTCTCTCGCTGATCTCGGAG 303
Query 242 ctctcgtgctctcaacctccgatcctctctccaaatctcatatctcCCATTTGGCTTTCT 301
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 304 CACTCGTTCTCTCAACCTCCGATCCTCTCTCCAAATCTCATATCTCCCATTTAGCTTTCT 363
Query 302 CTCGTTGGCGCCGTGAGAATCTCCCTGTTGGCTCAATCTCTCATCTTCCTTCTTCTCCAG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCGTTGGCGCCGTGAGAATCTCCCTGTTGGCTCAATCTCTCATCTTCCTTCTTCTCCAG 423
Query 362 CTCGTCCTCCCAAACCTCTCCTCGTTGCGACCAACGAAGTTCCAAATCCGAAAGACTCAA 421
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 424 CTCGTCCTCCCAAACCTCTCCTCGTTGCGACCAACCAAGTCCCAAATCCGAAAGACTCAA 483
Query 422 ACCTTCCTCTCAATGCTCATATGCTTCATAATCTAGCTCATGTCGAGCTCAATGCTATTG 481
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 484 ACCTTCCTCTCAATGCTCATATGCTTCATAATCTAGCTCATGTTGAGCTTAATGCTATTG 543
Query 482 ATTTGGCTTGGGACACTGTTGCTCGTTTCTCTCCCTTCTTCGACGTTTTGGGTCGCAACT 541
||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 544 ATTTGGCTTGGGATACTGTTGCTCGTTTCTCTCCTTTCTTCGACCTTTTGGGTCACAACT 603
Query 542 TCTTTGATGACTTTGCTCATGTTGCTGATGATGAGAGTCGCCATTTCTTGTGGTGTTCCC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCTTTGATGACTTTGCTCATGTTGCTGATGATGAGAGTCGCCATTTCTTGTGGTGTTCCC 663
Query 602 AGAGACTCGCTGAGCTTGGTTTCAAGTATGGAGATATACCGGCTAATAATTTGCTCATGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGAGACTCGCTGAGCTTGGTTTCAAGTATGGAGATATACCGGCTAATAATTTGCTCATGA 723
Query 662 GGGAATGCGAGAAGACATCCAACAATGTCGCTGCTCGCTTGGCT-GTTATCCCTCTTGTT 720
||||||||||||| || ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 724 GGGAATGCGAGAAAACTTCCAACAATGTCGCTGCTCGCTTGGCTTGT-ATCCCTCTTGTT 782
Query 721 CAGGAGGCTAGAGGACTTGATGCTGGACCTAGGTTGGTCAAACGGCTGACGGGATTCGGA 780
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 783 CAGGAGGCTAGAGGACTTGATGCTGGACCTAGGTTGGTCAAACGGCTGACAGGATTTGGA 842
Query 781 GATAATAGGACTTCTAAAATCGTGGCTAAGATCGCTGAGGAGGAAGTTGCACATGTAGCT 840
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 843 GATAACAGGACTTCGAAAATCGTGGCGAAGATCGCTGAGGAGGAAGTTGCACATGTAGCT 902
Query 841 GTTGGTGTAGACTGGTTTCTCTCTGTGTGTCAAAAGATGAACC--------------A-- 884
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 903 GTTGGTGTAGACTGGTTTCTCTCTGTGTGTCAAAAGATGAACCGTGCTCCTTCCCCTACA 962
Query 885 TTT---GATC--A--AA-GAGTATGGTGTCGAGTTAAGGGGCCCTTTTAACCACTCAGCT 936
||| |||| | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 963 TTTAAAGATCTGATCAAAGAGTATGGTGTCGAGTTAAGGGGCCCTTTCAACCACTCAGCT 1022
Query 937 CGGGAGGTAGCTGGCATTCCACGAGATTGGTATGATCCATCATGTGGCACAGAAGTAGAT 996
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1023 CGGGAGGTAGCTGGCATTCCGCGAGATTGGTATGATCCATCATGTGGCACGGAAGTGGAT 1082
Query 997 AAAGGCGATAACAAACAGGGTGACAAGGAGCAACTTTCTGCAGTTTATGATAGGCTCACT 1056
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1083 AAAGGCGATAACGAACAGGGTGACAAGGAGCAACTCTCTGCAGTTTACGATAGGCTCACT 1142
Query 1057 CACATTATTTCGATGGAGAGTGAGAATTCAAGTCTCGGAAGGCCAGCCAAATGAAATGAT 1116
|||||||| || ||||||||||||||||||||||| | || ||| |||||||||||||||
Sbjct 1143 CACATTATCTCAATGGAGAGTGAGAATTCAAGTCTTGAAAAGCCTGCCAAATGAAATGAT 1202
Query 1117 ----T--G-G-C--G-TT--AT------A-A-CTGATGAATGAGTGTCAGGCGTAATTTC 1155
| | | | | || || | | ||||||||||||||||||||||||||||
Sbjct 1203 GCAGTCAGAGTCTTGATTTGATGGCGTTATAACTGATGAATGAGTGTCAGGCGTAATTTC 1262
Query 1156 TTGGGCTCTGGAAGTACAAATTAATGTT 1183
||||||||||||||||||||||||||||
Sbjct 1263 TTGGGCTCTGGAAGTACAAATTAATGTT 1290
Score = 82.4 bits (44), Expect = 9e-15
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 5 TGTTGATTCATCATCTGCGTGCGTTTCCAAC-GACTTGTCTGTCTCCTCGTTCTCTCACC 63
|||||||||||||||| ||| | ||| |||| | ||| ||||||||||||||||||||||
Sbjct 46 TGTTGATTCATCATCTTCGTCCTTTTTCAACTG-CTTCTCTGTCTCCTCGTTCTCTCACC 104
Query 64 ATTTCC 69
||||||
Sbjct 105 ATTTCC 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5