BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470646
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06265.1 | Symbols: | other RNA | chr1:1914943-1917661 REVE... 560 8e-159
> AT1G06265.1 | Symbols: | other RNA | chr1:1914943-1917661 REVERSE
LENGTH=2210
Length=2210
Score = 560 bits (303), Expect = 8e-159
Identities = 413/462 (89%), Gaps = 23/462 (5%)
Strand=Plus/Plus
Query 580 TCAGATGATTCTTAAGCAGCACCAGACAGGTTCATCTACAGAGAGGAATGTCGGAAAATG 639
|||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1645 TCAGATGATTCTGAAGCAGTGCCAGAAAGGTTTATCTACAGAGAGGAATGTCGGAAAATG 1704
Query 640 AAGACAATGGTCATAAGGGGTGGTTGATTCTGTTTGAAGGAAAGATCTAGGTATTAGGCA 699
||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||
Sbjct 1705 AAGACAATGGTCATAAGGGGTGGCTGATTCTGTTTGCAGGAAAGATCCAGATATTAGACA 1764
Query 700 ACATGCTCTGG-GAAGCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAAAAATTT 758
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1765 ACATGCTCTGGCGA-GCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAGAAATTT 1823
Query 759 AGTTTCAGGTTCCAAACCATTGGTGGGAGATAGTGGAATCTTCAAGAATGAGGCAGAGCA 818
|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1824 AGTTTCAGGTTCCAAACCATTGATGAAAGATAATGGAATCTTCAAGAATGAGGCAGAGCA 1883
Query 819 GAGAACATGAATACAATGAAACTCACCGGTCAAGT--------GCACCTGAACAACGCTG 870
||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 1884 GAGAACATGAATACATTGAAACTCACCGGTCAAGTACTCAATTGCACCTTAACAACGCTG 1943
Query 871 GTCGCTGAGTACAATCCCCTGCTTCGGTTCTAGATAGATGTTTCCGGTTTGGCTTAACCG 930
|||||| |||| || |||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1944 GTCGCTAAGTATAAGCCCCTGCTTCGGTTCTGGATAGATGTTTCCGGTTTGGTTTAGCCG 2003
Query 931 AA----------CAGGCTATAGAGGAAATGGTCTTTAATGAATTTAATTTCGATGTAACT 980
|| ||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2004 AATAAAATTAGACAGGCTATAGAGGAAATAGTCTTTAATTAATTTAATTTCGATGTAACT 2063
Query 981 AACAATA---CATGTTTTAAGCGTTGATTAACCGTTCAAAAA 1019
||||||| |||||||||||||||||||||||||| |||||
Sbjct 2064 AACAATAGTACATGTTTTAAGCGTTGATTAACCGTTAAAAAA 2105
Score = 462 bits (250), Expect = 2e-129
Identities = 377/432 (87%), Gaps = 34/432 (8%)
Strand=Plus/Plus
Query 89 AAAC-TAAACGTACTCGTTGTAAAACTGGTGCTGATTGGGTTTCTCTGAAGATTGTTGAT 147
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1087 AAACGTAAAGGTACTCGTTGTAAAACTGGTGCTGATTGGCTTTCTCTGAAGATTGTTGAT 1146
Query 148 CCTTCC-------A---T--TG-TG--AA--CTTGAGTCCTTCTTTCTTTGTCATTTCTC 190
|||||| | | || || || ||||||||||||||||||||||| || ||
Sbjct 1147 CCTTCCATTGTAAACTTTGGTGTTGACAATTCTTGAGTCCTTCTTTCTTTGTCA-TT-TC 1204
Query 191 TAAATAAAGTACAATTTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGAAAAAACAT 250
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1205 TAAATAAA-TACAAATTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGGAAAAACAT 1263
Query 251 GTGAC-GCAGAAATTTGAGGCTTCCAGGTACTTAA-TTC-TTATT-TCAGAA-CC-TGTT 304
||| | | |||||||||||||||||||| | | || ||| ||| |||||| || ||||
Sbjct 1264 GTG-CTGGAGAAATTTGAGGCTTCCAGG-A-TCAAGTTCATTACAGTCAGAAACCCTGTT 1320
Query 305 GAGAAACTTTGCTCAGATGCGGTTCAAGACTTGCTTGCTAAAGCCTCTTTCGGTTATGGA 364
||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 1321 GAGAAACTTTGTTCAGATGTGGTTCAAGACTTGCTTGCTGAAGCCTCTTTCGTTTATGGA 1380
Query 365 AAACCAGTGCCTCCCCTTCAAATG-TTACATGAATATGCTTTGATTTGAAGAAATCTTGA 423
|||||| |||||||||||| ||| ||||||||||||||||||| |||||||| |||
Sbjct 1381 AAACCATTGCCTCCCCTTCTAATTATTACATGAATATGCTTTGAA---AAGAAATCATGA 1437
Query 424 ATATGGAAAGAAGCCATAGATATTGTTCAGCAAGAAAAGTGAACCAAGGATGATGCTTGC 483
||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||
Sbjct 1438 ATATGGAAAGAAGCCATGGGTATTGTTCAGCTAGAAAACTGAACCAAGGATGATGCTTGC 1497
Query 484 TTTGTCATGCGG 495
||||||||||||
Sbjct 1498 TTTGTCATGCGG 1509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5