BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470661
Length=578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06420.1 | Symbols: | unknown protein; Has 1017 Blast hits ... 403 8e-112
> AT1G06420.1 | Symbols: | unknown protein; Has 1017 Blast hits
to 654 proteins in 124 species: Archae - 0; Bacteria - 39;
Metazoa - 232; Fungi - 69; Plants - 40; Viruses - 0; Other
Eukaryotes - 637 (source: NCBI BLink). | chr1:1958923-1959947
FORWARD LENGTH=1025
Length=1025
Score = 403 bits (218), Expect = 8e-112
Identities = 296/333 (89%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 248 GCGTTAAGAAAGAGGAAATTGAGGTCTCTGCAATTGTTGTGAGCAACAAGGATGACGTTG 307
|||||||||||||||||||| |||| |||| || |||||||||||||||| || | ||
Sbjct 372 GCGTTAAGAAAGAGGAAATTAAGGTTTCTGGAA---TTGTGAGCAACAAGGACGAAGATG 428
Query 308 GAGGAGATACGAGGGAGAAAAAGAAGAAGTATACTGTGAAAGAGAACGCTAGGAGAGCTT 367
| | |||| |||||||||||||||||||| || | |||||||||||| ||||||| | ||
Sbjct 429 GTGTAGATTCGAGGGAGAAAAAGAAGAAGAATCCGGTGAAAGAGAACACTAGGAGGGTTT 488
Query 368 TCAAGTACAAGGGAGAGAATGCTGCTAAGGAAGGAACTCATTGCTGGATCAAGAAGAAAG 427
|||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 489 TCAAGTCCAAAGGAGAGAATGCTGCTAAGGAAGTAACTCAATGCTGGATCAAGAAGAAAG 548
Query 428 TAGAAGAGGAAGGAGAGACAAGTGAGGTCAAGG-AACCTGCGAGATTAAATACCAAGCAA 486
||||||||||| ||||||||||||||||||||| ||| ||| ||||| | || ||| |||
Sbjct 549 TAGAAGAGGAAAGAGAGACAAGTGAGGTCAAGGGAAC-TGCCAGATTGATTAGCAAACAA 607
Query 487 GATTATCACCAAAACCAA-AGACATGATTTGTCGTCTACACGTGTTATGAGGGCAACAAC 545
| |||| |||||||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 608 GGTTATTACCAAAAC-AAGAGACATGATTGGTCGTCTACACGTGTTATTAGGGCAACAAC 666
Query 546 AAGTACTATGGTGTGGGTGAAGAAGGGTAAGAA 578
|||||||||||| ||||||||||||||||||||
Sbjct 667 AAGTACTATGGTTTGGGTGAAGAAGGGTAAGAA 699
Score = 370 bits (200), Expect = 8e-102
Identities = 233/248 (94%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGATCATGagaagattgatgggaagatgaagaagaagaagaagaGTGTGGCTTCG 60
||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 65 ATGGAGGATCATGAGAAGATTGATGGG-A-A-GAAGAAGAAGAAGAAGAGTGTGGCTTTG 121
Query 61 ATTCCGGCTAACTACGTCTCCATTCTTCAGCTTCAGCAACGTTGGCTGAAGGAGAAAGAG 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 122 ATTCCGGCTAACTACGTCTCCATTCTTCAGCTTCAGGAACGTTGGCTGAAGGAGAAAGAG 181
Query 121 CAGAAACAAAAGGAAAAAGACTTTGTAGAGAGAGGAGTGAAGCAGCAGGTTGATCATG-G 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 182 AAGAAACAAAAGGAAAAAGACTTTGTAGAGAGAGGAGTGAAACAGCAGGTTGATCA-GAG 240
Query 180 ACAACGAAGGAGAGAAGATGAAGAAGAAGGTAGTAAAGTCCATGGAAACAAAAGTGAAGC 239
|||||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||
Sbjct 241 ACAACGAAGGAGAGAAGAAGAAGAA-AATGTAGTGAAGGCCATGGAAACAAAAGTGAAGC 299
Query 240 TCGGGGAA 247
||| ||||
Sbjct 300 TCGAGGAA 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27779483291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5