BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470668

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06475.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   399    7e-111


> AT1G06475.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:1973834-1974386 
REVERSE LENGTH=553
Length=553

 Score =  399 bits (216),  Expect = 7e-111
 Identities = 344/400 (86%), Gaps = 32/400 (8%)
 Strand=Plus/Plus

Query  28   AGTATAAGAATGCTGCACCGCGACATGACTATGTCTATGTATGTAGTagagagagagaga  87
            |||||||||||||||||||| ||||||||    ||  |||| |||| |||||||||||||
Sbjct  50   AGTATAAGAATGCTGCACCGTGACATGAC----TC--TGTA-GTAG-AGAGAGAGAGAGA  101

Query  88   gGGACGTAGAGAATGAGAGTGATGATGAAGTGGGCGTCGTTGAAGAAGAAGAAGCAGCAA  147
            | || ||||| |||| |||| |||| ||||||||||||| ||||||||||||||| ||||
Sbjct  102  GAGAGGTAGACAATGGGAGTTATGAAGAAGTGGGCGTCGCTGAAGAAGAAGAAGCTGCAA  161

Query  148  CAAGAGGA-G-AC--G-G-C--C-AAAGAAACGCAAACATGGCAGCGATTAAGGAAT-T-  196
            |||||||| | ||  | | |  | |||||||| || ||||||||||||||||||||| | 
Sbjct  162  CAAGAGGAGGAACAAGTGACGGCTAAAGAAACACAGACATGGCAGCGATTAAGGAATCTG  221

Query  197  TGTT-----T--TCTACG---TCGTCTTCGTCGGCGAAGTGGAAGCGAGTGGAGATAATA  246
            | ||     |  ||| ||   ||||||||||||||||||||||||||||| |||||||||
Sbjct  222  TTTTCAACGTCGTCTTCGTCTTCGTCTTCGTCGGCGAAGTGGAAGCGAGTTGAGATAATA  281

Query  247  ATGGTGACAGAGATAGTAGACGGAGTAGTTTACAAAGTCATGTATGTAGTCGAAGCTCTT  306
            ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct  282  ATGCTGACAGAGATAGTAGACGGAGTAGTTTACAAGGTCATGTATGTAGTTGAAGCT-TT  340

Query  307  -GTTCTCGTTTCGACGCTCTGCTTCTTCTACCTTTGTTGTGGATGCCACATCTGATCCTT  365
             ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  
Sbjct  341  CGTTCTCGTTTCCACGCTCTGCTTCTTCTACCTCTGTTGTGGATGCCACATTTGATCCAA  400

Query  366  CTTTTTATTTCTTTCATTATATTATTCTTTCCAATTCATA  405
             ||||| ||||| |||||||||||||||||||||||||||
Sbjct  401  -TTTTTGTTTCTCTCATTATATTATTCTTTCCAATTCATA  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5