BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470679
Length=1885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2333 0.0
> AT1G06580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:2014003-2016054 REVERSE LENGTH=2052
Length=2052
Score = 2333 bits (1263), Expect = 0.0
Identities = 1521/1642 (93%), Gaps = 32/1642 (2%)
Strand=Plus/Plus
Query 1 AGATCCCTCCCTGCTCGCCGGAGCACTACTCGGCGTCTTCGTCGGATCTTCTTTTAGGGT 60
||| ||||||||||||||||||||||||||||||| | | || |||||||||| |||||
Sbjct 1 AGACCCCTCCCTGCTCGCCGGAGCACTACTCGGCGAC-T--TCAGATCTTCTTTCAGGGT 57
Query 61 TCATCCAGGAACTAGATTGT---C-AA---AAT-TTC-G------------TCGGATGCG 99
|| |||||||| |||||||| | || ||| ||| | |||||||||
Sbjct 58 TCTTCCAGGAATTAGATTGTCAACGAATCCAATCTTCTGAAACAAAAATCTTCGGATGCG 117
Query 100 GAGATCGATTTTGATTGTGATTGCGTTAACGGCGAAGGGGTTTCTTCATCGGCATCTTCT 159
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGATCGATTGTGATTGTGATTGCGTTAACGGCGAAGGGGTTTCTTCATCGGCATCTTCT 177
Query 160 GGAGAAAGGTAATCCTGTAACTGCTCTCTCATTAAACGTGTGCAATTTCGGAGCTTTTTC 219
|||||||||||||| ||||||||||||||||||| | | ||||||| | ||||||||||
Sbjct 178 GGAGAAAGGTAATCTTGTAACTGCTCTCTCATTACGCATTTGCAATTCCCGAGCTTTTTC 237
Query 220 TGGT-GGCAGTGATTACCGAGAGAGATTGAGAAGTGGGCTTCACTCTATTAAGTTTAACG 278
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGGTAGG-AGTGATTACCGAGAGAGATTGAGAAGTGGGCTTCACTCTATTAAGTTTAACG 296
Query 279 ATGCACTTACTTTGTTCTGTGACATGGCTGAGTCTCGTCCCCTCCCTTCCATTGTTGATT 338
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 ATGCACTTACTTTGTTCTGTGACATGGCTGAGTCTCATCCCCTCCCTTCCATTGTTGATT 356
Query 339 TCAGTAGATTATTGGTTGCCATTGCTAAGCTGAAGAAGTATGAAGCTGTGATCTCTCTCT 398
||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 357 TCAGTAGATTACTGATTGCCATTGCTAAGCTGAATAAGTATGAAGCTGTGATCTCTCTCT 416
Query 399 TTCGGCATATAGAGATTTTGGGAATTTCACATGATCTCTATAGCTTCAGTACTTTAATCG 458
|||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 417 TTCGGCATTTGGAGATGTTGGGAATTTCACATGATCTCTATAGCTTCACTACTTTAATAG 476
Query 459 ATTGCTTCTGTCGATGCTCTCGACTCTCTCTTGCTCTGTCATGTCTGGGAAAGATGATGA 518
|||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 ATTGTTTCTGCCGATGCGCTCGACTCTCTCTTGCTCTGTCATGTCTAGGAAAGATGATGA 536
Query 519 AGCTTGGTTTTGAGCCCAGCATTGTTACATTTGGCTCTCTGGTGAATGGATTCTGTCACG 578
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||
Sbjct 537 AGCTTGGTTTTGAGCCCAGCATAGTTACCTTTGGATCTCTGGTCAATGGATTCTGTCACG 596
Query 579 TAAATAGAATTCAGGAGGCCATGTCTCTGGTTGATCAAATCGTGGGATTGGGATATGAAC 638
|||||||| || | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TAAATAGATTTTATGAAGCCATGTCTCTGGTTGATCAAATCGTGGGATTGGGATATGAAC 656
Query 639 CTAATGTTGTAATCTACAACACTATCATTGATAGTCTTTGCGAAAACCGACAAGTGGATA 698
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 657 CTAATGTTGTAATCTACAACACTATCATTGATAGTCTCTGCGAAAAGGGACAAGTGAATA 716
Query 699 CTGCGCTGGACGTTTTGAAGCATATGGAA-AAAATGGGAATTAGACCGGATGTTATTACC 757
|||||||||| |||||||| |||||| || |||||||||||||||||||||||| ||||
Sbjct 717 CTGCGCTGGATGTTTTGAAACATATG-AAGAAAATGGGAATTAGACCGGATGTTGTTACA 775
Query 758 TACAACTCTCTCATTACTCGCCTTTTCCATTCTGGTAAATGGGGCGTCTCTGCTCGAATA 817
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 776 TACAACTCTCTCATTACTCGCCTTTTCCATTCTGGTACATGGGGCGTCTCTGCTCGAATA 835
Query 818 CTGAGTGATATGATGAGGATGGGAATCCA-CCCGGATGTAATCACTTTCAGTGCTATGAT 876
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 836 CTGAGTGATATGATGAGGATGGGAATC-AGCCCGGATGTAATCACTTTCAGTGCTTTGAT 894
Query 877 CGATGTGTTTGGGAAAGAGGGGCAGCTTTTAGAGGCTAAAAAACAGTACGACGAGATGAT 936
|||||||| |||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 895 CGATGTGTATGGGAAAGAGGGGCAGCTTTTAGAGGCTAAGAAACAGTACAATGAGATGAT 954
Query 937 TCAAAGGTCAGTTGACCCTAATATAGTCACATACAATTCACTGATCAACGGGCTTTGCAT 996
||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 955 TCAAAGGTCAGTTAATCCTAATATTGTCACTTACAATTCACTGATCAACGGGCTTTGCAT 1014
Query 997 TCACGGTCTTCTAGATGAAGCCAAAAAAGTGCTTAAT-TTTATGGTAAGTAAAGGTTTCT 1055
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||
Sbjct 1015 TCACGGTCTTCTAGATGAAGCCAAAAAAGTTCTTAATGTTT-TGGTAAGTAAAGGTTTCT 1073
Query 1056 TCCCCAATGCAGTGACTTATAATACTCTCGTAAATGGATATTGCAAGTCCAAGAGGGTAG 1115
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1074 TCCCAAATGCAGTGACTTATAATACTCTCATAAATGGATATTGCAAGGCCAAGAGGGTAG 1133
Query 1116 ATGATGCGATGAAAATCTTGTGCGTAATGTCGCGTGATGGAGTGGATGGTGACACATTCA 1175
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1134 ATGATGGGATGAAAATCTTGTGCGTAATGTCCCGTGATGGAGTGGATGGTGACACATTCA 1193
Query 1176 CTTACAACACTCTTTACCAGGGTTACTGTCAAGCGGGCCAATTTAATGCTGCCGAAAAGG 1235
||||||| ||||||||||| ||||| ||||||||||| |||||| ||||||||||||||
Sbjct 1194 CTTACAATACTCTTTACCAAGGTTATTGTCAAGCGGGAAAATTTAGTGCTGCCGAAAAGG 1253
Query 1236 TTTTAGCTCGGATGGTTTCTTGTGGGGTGCGTCCCGATATTTATACCTTTAACATTTTGT 1295
|||||| |||||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 1254 TTTTAGGTCGGATGGTTTCTTGTGGCGTGCATCCCGATATGTATACCTTTAACATTTTGT 1313
Query 1296 TAGACGGTCTGTGTGAGCATGGAAAAATAGAAAAAGCATTGGTGAAATTGGAGGATTTAC 1355
|||||||||| ||||| ||||||||||||| |||||||||||||| | |||||||||| |
Sbjct 1314 TAGACGGTCTATGTGATCATGGAAAAATAGGAAAAGCATTGGTGAGACTGGAGGATTTGC 1373
Query 1356 AAAAGAGTGAAACAGTTGTCGGTCTTATTACGTATAATATTATCATCAAAGGGATGTGCA 1415
|||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| |||| |
Sbjct 1374 AAAAGAGTAAAACAGTTGTTGGTATTATTACATATAATATTATCATCAAAGGGCTGTGTA 1433
Query 1416 AGGCTAATAAGGTGGAAGATGCTTGGTATTTATTTTGCAGTCTCGCTCTCAAAGGGGTAA 1475
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1434 AGGCTGATAAGGTGGAAGATGCTTGGTATTTATTTTGCAGTCTTGCTCTCAAAGGAGTAA 1493
Query 1476 GTCCTGATGTTATAACGTACACTACAATGATGATAGGCTTGCGTAGGAAAAGACTATGGC 1535
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GTCCTGATGTTATAACGTACATTACAATGATGATAGGCTTGCGTAGGAAAAGACTATGGC 1553
Query 1536 TTGAAGCGCATGAGCTGTATAGaaaaatgaaaaaaGATGATGGGCTTATGCCAATTAAGT 1595
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1554 GTGAAGCGCATGAGCTGTATAGAAAAATGCAAAAAGAGGATGGGCTTATGCCAATTAAGT 1613
Query 1596 AGACGTATAAAAGAGGTAAATA 1617
||||||||||||||||||||||
Sbjct 1614 AGACGTATAAAAGAGGTAAATA 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93322813155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5