BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470689
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem... 1768 0.0
> AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem
II subunit P-1 | chr1:2047825-2049418 FORWARD LENGTH=1139
Length=1139
Score = 1768 bits (957), Expect = 0.0
Identities = 1024/1056 (97%), Gaps = 5/1056 (0%)
Strand=Plus/Plus
Query 1 ACTCTTGGTTTCATCTCCATACATTAACACACTCCAACAATCCTCAAAAAACACTTTCAT 60
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3 ACTCTTGGTTTCACCTCCATACATTAACACA--CCAACAATCCTCAAAAAACACTTTCAT 60
Query 61 AGCTTAATCACACACAA--AAagaagagagaaagagagatatacagagagagaTAATGGC 118
| ||||||||||||||| | |||||||||||||||||| | | ||| ||||||||||||
Sbjct 61 AACTTAATCACACACAAGGAGAGAAGAGAGAAAGAGAGAAAGAGAGACAGAGATAATGGC 120
Query 119 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCCTCAGCCGCACGATCATCATC 178
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCATCAGCCGCACGATCATCATC 180
Query 179 TTCCTCCTCATCCCAGCGTCACGTGTCACTCTCCAAACCTGTTCAGATTATGTGTAAAGC 238
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 181 TTCCTCCTCATCCCAGCGTCACGTGTCGCTCTCCAAACCTGTTCAGATCATCTGTAAAGC 240
Query 239 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 300
Query 299 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 360
Query 359 TGCAAATGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAACGGAGATGG 418
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGCAAACGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAATGGAGATGG 420
Query 419 ATTCAAAGTGCAGGTGCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 478
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCAAAGTGCAGGTTCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 480
Query 479 AGTCCTTAGGTACGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGTCCTTAGGTTCGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 540
Query 539 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 600
Query 599 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 660
Query 659 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 720
Query 719 CTACTATTACCTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 778
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTACTATTACTTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 780
Query 779 GCTGATCACAGCCACTGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 838
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTGATCACAGCAACCGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 840
Query 839 CAAGAGGTGGTTCAAGGGAGCTAGGAAATTTGTCGAGAGTGCAGCCACTTCTTTCAGTGT 898
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 841 CAAGAGGTGGTTCAAGGGAGCCAGGAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGT 900
Query 899 TGCTTGAGTGAAAGCAACACAACATAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 TGCTTGAGTGAAAGCAACACAACGTAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 960
Query 959 GTAAAAAATGGAAA-TGAAACTGAGCTTTTGAGAACTATCAAGATGATGTCACCTTTGCG 1017
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 961 GTAAAAAATGGAAAATGAAACTGAGCTTTTGAGAACTATCAAGATGATGTTACCTTTTCG 1020
Query 1018 GTTTCACTTGTGTACCTGTGATAACAGACTCGTTTT 1053
| |||||||||||||| ||||||||||||||||||
Sbjct 1021 GCATCACTTGTGTACCTATGATAACAGACTCGTTTT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5