BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470691
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06690.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 2067 0.0
> AT1G06690.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:2049602-2052154 REVERSE LENGTH=1389
Length=1389
Score = 2067 bits (1119), Expect = 0.0
Identities = 1248/1311 (95%), Gaps = 5/1311 (0%)
Strand=Plus/Plus
Query 52 TTTTCCAATTTCaaaaaaaaTAAAGAACGAATCAGCATGGCCATGGCTACGCACTTCACC 111
|||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||
Sbjct 83 TTTTCCAATTTC--AAAACCCAAA-AACAAATCAGCATGGCCATGGCTACGCACTTCACC 139
Query 112 TTCCCTTTCAACTATGTTGTTTCCGAAGGCTCTCGTGGAAGAGGAAGTTTCGTCCGTAAG 171
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 140 TTCCCTTTCAACTATGTTGTTTCCGAAGGCTCTCATGGAAGAAGAAGTTTCGTCCGGAAG 199
Query 172 CTGGTCAGAGCTGTAGCCTCCGGTGATTCAGTGGCTCCGGCGATGTCGGAAGAATCAAAA 231
||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 200 CTGGTCAGAGCTGTAGCCTCCGGAGATTCCGTGGCTCCGGCGATTTCGGAAGAATCAAAA 259
Query 232 GTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTGAAATTGGGTGGCTCGGATTTGAAAGTGACGAAGCTTGGGATCGGAGTCTGGTCTTGG 319
Query 292 GGTGATAACAGCTACTGGAATGATTTCCAGTGGGATGACAGGAAATTGAAGGCTGCTAAA 351
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 320 GGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGACAGAAAATTGAAGGCGGCTAAA 379
Query 352 GGTGCTTTCGATACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCTGAAGTTTAT 411
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 380 GGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTAT 439
Query 412 GGTTCCAAGTTTTCTCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGATTTATCCGT 471
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 440 GGTTCCAAGTTTTCCCTGGGTGCTATAAGCTCTGAAACTCTTTTAGGAAGATTCATCCGT 499
Query 472 GAGAGAAAAGAGAGATATCCTGCAGCTGAGATTTCAGTTGCTACAAAGTTTGCTGCATTG 531
|||||||||||||||||||| | ||||||| |||| ||||| || |||||||||||||||
Sbjct 500 GAGAGAAAAGAGAGATATCCCGGAGCTGAGGTTTCGGTTGCAACCAAGTTTGCTGCATTG 559
Query 532 CCATGGCGATTGGGTCGTAAAAGTGTTATCACTGCCCTTAAAGATTCCCTTTCCCGGCTC 591
||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 560 CCATGGCGATTTGGTCGTGAAAGTGTTGTCACTGCCCTTAAAGATTCCCTTTCCCGGCTT 619
Query 592 GAGCTTTCATCTGTAGATCTCTATCAACTCCATTGGCCTGGACTATGGGGAAATGAAGGA 651
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 620 GAGCTTTCATCTGTTGATCTCTATCAACTGCATTGGCCAGGACTATGGGGAAATGAAGGA 679
Query 652 TATCTTGATGGTCTTGGGGATGCTGTTGAACAAGGACTTGTCAAAGCTGTTGGTGTTTCT 711
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 680 TATCTTGATGGTCTTGGGGATGCTGTTGAACAAGGACTTGTCAAGGCTGTTGGTGTTTCT 739
Query 712 AACTACAGCGAGAAGCGGCTACGTGATGCATATGAAAGACTCaaaaaaaGAGGAATTCCT 771
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 740 AACTACAGCGAGAAGCGGCTTCGTGATGCTTATGAAAGACTCAAAAAGAGAGGAATTCCT 799
Query 772 CTCGCCTCAAATCAAGTAAACTACAGTCTAATATACAGAGCTCCAGAGCAGACTGGTGTA 831
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 800 CTGGCCTCAAATCAAGTCAACTACAGTCTGATATACAGAGCTCCAGAGCAGACTGGTGTT 859
Query 832 AAGGCTGCTTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGGT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 AAGGCTGCTTGTGATGAGCTTGGAGTTACTTTAATTGCATATTCCCCCATCGCTCAAGGT 919
Query 892 GCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTAT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GCTCTAACTGGTAAATACACCCCAGAGAACCCACCCTCAGGTCCTCGGGGTCGCATTTAT 979
Query 952 ACGCGTGAGTTTTTAACAAAGCTTCAGCCCCTGTTGAATAGAATCAAACAAATTGGTGAA 1011
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 980 ACGCGTGAGTTCTTAACAAAGCTTCAACCCCTGTTGAATAGAATCAAACAAATTGGGGAA 1039
Query 1012 AACTACAGCAAAACGCCCACACAGGTAGCGTTGAACTGGTTGGTGGCACAAGGTAACGTG 1071
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1040 AACTACAGCAAAACTCCCACACAGATAGCATTGAACTGGTTGGTGGCACAAGGGAACGTG 1099
Query 1072 ATACCCATCCCAGGAGCCAAGAACGCAGAACAAGCCAAAGAGTTTGCGGGAGCGATAGGT 1131
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1100 ATACCCATCCCAGGAGCCAAGAACGCAGAACAAGCCAAAGAGTTTGCTGGAGCGATAGGT 1159
Query 1132 TGGAGTCTGACAGACAATGAAGTGAGCGAGCTACGGACCCTGGCCTCTGAGATAAAACCC 1191
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1160 TGGAGTCTGACAGACAATGAAGTGAGTGAGCTACGGTCCCTGGCCTCTGAGATAAAACCC 1219
Query 1192 GTCATTGGTTTCCCTGTTGAGTATCTCTGAACTCTTAAACACTCGGTTTGTAGCATTTGT 1251
||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1220 GTCGTTGGTTTCCCTGTTGAGTATCTCTGAACTCTTAA-CACTCTGTTTGTAGCATTTGT 1278
Query 1252 AAAGATTAAAAGTTACAATATGAATTAAAAGTAGTACATAGATGATAGTAAACTGTTGTA 1311
|||| | ||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||
Sbjct 1279 AAAGCTCAAAAGTTACAATATGAACTAAAAGTAGTATATAGATGATGGTAAAGTGTTGTA 1338
Query 1312 ATAC-TATGCAAATAAAATCTCTTTGCCTCTTCGAGAACTTTACAGTAGCC 1361
|||| |||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1339 ATACATATGCAAATAAAATCTTTTTGCCTCTTTGAGAACTTTACAGTAGCC 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5