BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470697
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06750.2 | Symbols: | P-loop containing nucleoside triphosp... 2388 0.0
> AT1G06750.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:2073701-2076505
FORWARD LENGTH=1917
Length=1917
Score = 2388 bits (1293), Expect = 0.0
Identities = 1425/1489 (96%), Gaps = 8/1489 (1%)
Strand=Plus/Plus
Query 1 ATGATAGCAGCCGCAGTGCATTACCGCCTGCGGAGGATACGTGACTCCAAAATCATCCCT 60
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 275 ATGATAGCAGCCGCAGTGCATTACCGTCTGCGGAGGCTACGTGACACCAAAATCATCCCT 334
Query 61 CGTCTCAGATTATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 120
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CGTCTCAAATCATCTCACAAACACAAAGGCCATGAGAAACTCGAGAGATTCTCTCATTAC 394
Query 121 GTAGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GTCGCAAGGCAAATGGGATTCAAGGACAGAAGAGAGTGTCCAAATCTCTGCAAGTTAGCA 454
Query 181 GCAGAATACATAAGCAAATCTGAATGTTGTGAAGAAGATATTTACAGCTTTTTCTCTGAA 240
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 455 GCAGAATACATAAGTAAATCTGAATGTTGTGAAGAAGACATTTACAGCTTTTTCTCTGAA 514
Query 241 GAGCCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GAACCTGATGCTGATACCCTCTTCATTAAGCTTGTTGAGGAGTTTGAAAGATGCATTCTC 574
Query 301 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTAGTCAGATATTGAGCGCG 360
||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 575 AGCTACTTTGCGTTTCACTGGAGCCACGCCGATCTCATGATTACTCAGGTACTGAGCGCT 634
Query 361 GATGCTGAGCCAAAGAGGAAGCTGAAGCAAATTGTGATGGCAGCTACAAGGGAGCAGAGG 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 635 GATGCTGAGCCAAAGAGGAAGCTGAAACAAATTGTGATGGCAGCTACAAGGGAGCTGAGG 694
Query 421 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ATTAAGAGGGTGACTAAGAACTTAAAAGTGGCAAGAGTGTTCAACACTTTGGTAGAGGAA 754
Query 481 ATGAAAGCAATGGGGCTCGCGTCTGCT-GATGACTCGCAGTGTACAGAAGTTATGGCACC 539
|||| |||||||||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 755 ATGAGAGCAATGGGGCTCGCGTCTG-TGGATGACTCGCAGTGCACAGAAGTTATGGCACC 813
Query 540 AGTGGCTCACAAAGACCGAAGTCCGGTTCTGCTCCTCATGGGTGGTGGGATGGGTGCAGG 599
|||||||||||||||| ||||||| || || ||||| |||||||||||||||||||||||
Sbjct 814 AGTGGCTCACAAAGACAGAAGTCCAGTGCTACTCCTTATGGGTGGTGGGATGGGTGCAGG 873
Query 600 AAAAAGCACTGTTCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 659
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GAAAAGCACTGTGCTTAAGGACATACTCAAAGAAGCATTCTGGGCAGGAGCAGACTCTGT 933
Query 660 GGTGATTGAAGCTGATGCTTTCAAAGAATCTGATGTCATTTACAGAGCCTTAAGCTCTCG 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 934 GGTGATTGAAGCTGATGCTTTCAAAGAGTCTGATGTCATTTACAGAGCCTTAAGCTCTCG 993
Query 720 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCACCAGTCATCTACAGATGCAGC 779
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 994 TGGCCATGTCGATATGATCCAGACAGCTGAATTGGTTCATCAGTCATCAACAGATGCAGC 1053
Query 780 TTCATCCCTGCTAGTGACGGCTCTGAATGAAGGGAGGGATGTGATAATGGATGGGACACT 839
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1054 TTCATCCCTGCTAGTGACGGCTCTGAACGAAGGAAGGGATGTGATAATGGATGGGACACT 1113
Query 840 CTCGTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGAAACGTGCACCGTCACCA 899
||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1114 CTCTTGGGTACCTTTTGTGGTGCAGACAATAACAATGGCGAGGAACGTACACCGACACCA 1173
Query 900 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATCACAGAGAACTATTG 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1174 TTACAGAATGGGAGCTGGATACAAGGTTGGTGATGATGGAGTTATAACAGAGAACTATTG 1233
Query 960 GGAACGGATTGGTGAAAGGCAACAGCTTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1019
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1234 GGAACGAATTGGTGAAAGGCAACAGATTCAAGAGGATGGTCGTAGGAGAAAACCGTATAG 1293
Query 1020 AATAGAACTAGTTGGAGTTGTATGCGATGCATATTTAGCAGTAATAAGAGGCATTAGGAG 1079
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 1294 AATAGAACTAGTTGGAGTTGTGTGCGATGCGTATTTAGCAGTTATAAGAGGCATTAGGAG 1353
Query 1080 AGCCATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 AGCTATCATGTGCAGAAGAGCAGTTAGGGTGAGATCACAGCTGAGATCTCACAAACGGTT 1413
Query 1140 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACCAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1414 TGCGGAAGCATTTCCTACATATTGCAGCCTTGTCGACAATGCTAGGCTCTACTGCACTAA 1473
Query 1200 CGCACTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACGTTGCTAGT 1259
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1474 CGCGCTGGAAGGCTCTCCAAAGCTGATAGGTTGGAAAGAAAAGGAAAAGACATTGCTAGT 1533
Query 1260 GGATACAGAAGAGATAGACTGTTTGAAACGAGTAGGAGGGTTAAACGAGAACGCAGACTC 1319
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 1534 AGATACAGAAGAGATAGATTGTTTGAAGCGAGTAGGAGGGTTAAACGAGAACGCAGGCTC 1593
Query 1320 CATTTACGAGCTTTATAGACAACCCAATCCTGCTTGTGAAACTGGATCAATCTGGAAAGA 1379
|||||||||||| |||||||||||||| |||||||||||| | || ||||||||||||||
Sbjct 1594 CATTTACGAGCTCTATAGACAACCCAACCCTGCTTGTGAAGCAGGTTCAATCTGGAAAGA 1653
Query 1380 CATTGTTCTTTCACCTTCAAGGTTTAACATTCAACAGGAACTAAAATACTCCATTCAGAA 1439
|||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1654 CATTGTTCTTTCACCTTCAAGGTTTAGCATTCAACAGGAACTCAAATATTCCATTCAGAA 1713
Query 1440 AGTTGAAA---GCTCTAAACAAC-T-TC-TCAACAACACCAAAAGCTGA 1482
|||||||| | |||||||||| | || ||||||||||||||||||||
Sbjct 1714 AGTTGAAAAAAGATCTAAACAACATCTCATCAACAACACCAAAAGCTGA 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5