BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470698
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06760.1 | Symbols: | winged-helix DNA-binding transcriptio... 1528 0.0
> AT1G06760.1 | Symbols: | winged-helix DNA-binding transcription
factor family protein | chr1:2076504-2077698 REVERSE LENGTH=1090
Length=1090
Score = 1528 bits (827), Expect = 0.0
Identities = 1022/1113 (92%), Gaps = 25/1113 (2%)
Strand=Plus/Plus
Query 1 CTTCACAATCCTCATAATCACTTTCGAAATCACATTTACGTTTTCTAGCAATCACATTTT 60
|||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||
Sbjct 1 CTTCACAATCCTCATAATCACTTTCGAAATTACATTTACGCTTTCTTGCAATCAAATTTT 60
Query 61 CCGATCTTAAGTTCCGAAGACGATGTCAGAGGTGGAGTTAGAGAACGCAGCTACGATCGA 120
|||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 CCGATCTTAAGTTCAGAAGACGATGTCAGAGGTGGAAATAGAGAACGCTGCTACGATCGA 120
Query 121 CGGAACCACCGCTGAGGATGCGACGGTGACGGAGGCGGCAGTCGagaagaagaagcctgc 180
|||| |||||||| ||||||| |||||||||| ||||| || | |||||||||||||
Sbjct 121 AGGAAACACCGCTGCGGATGCGCCGGTGACGGATGCGGCCGT--TG-AGAAGAAGCCTGC 177
Query 181 agcgaagggacgaaagacgaagaaagttaaggaagtgaaggagaagaagactgttgctgc 240
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 AGCGAAAGGACGAAAGACGAAGAATGTTAAGGAAGTGAAGGAGAAGAAGACTGTTGCTGC 237
Query 241 tgctccgaagaagagaaCTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGACGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 CGCTCCGAAGAAGAGAACTGTTTCATCTCATCCTACTTACGAAGAGATGATTAAGGATGC 297
Query 301 GATTGTTACGTTGAAGGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATTGTTACGTTGAAAGAGAGAACTGGATCTAGCCAATACGCGATTCAGAAGTTCATCGA 357
Query 361 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTCTTGCTTCTCAATCTGAAGAG 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 GGAGAAGCGTAAGGAGCTTCCTCCAACATTCAGAAAGCTGTTGCTTCTCAATCTGAAGAG 417
Query 421 ACTTGTTGCTTCTGGGAAGCTTGTCAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 480
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 ACTCGTTGCTTCTGGGAAGCTTGTGAAGGTCAAAGCCTCGTTTAAACTCCCATCGGCGTC 477
Query 481 GGCTAAAGCATCATCCCCTAAGGCGGCGGCGGCGGCGACGACATCTGCTCCTGCGAAGAA 540
||||||||||||||||||||||||||| |||| | | | ||||||||||||||||||
Sbjct 478 GGCTAAAGCATCATCCCCTAAGGCGGCAGCGGAG---A--A-ATCTGCTCCTGCGAAGAA 531
Query 541 GAAACCGGCGGCGACTGTGGCGGTTACTAAGCCGAAGGGAAAGGTCGCAGCGGCTCCCAA 600
|||||||||| |||||||||||||| ||| ||||| |||||||||| |||||| ||||
Sbjct 532 GAAACCGGCG---ACTGTGGCGGTTACCAAGGCGAAGAGAAAGGTCGCTGCGGCTTCCAA 588
Query 601 AGCGAAGAAATCAG-CAGCCGTTAAACCTAAGACAGCTGCTGCTAAGAAAGTGACTGCCA 659
|| |||||| || | ||||||||||||||||| |||||||||||||||||||| || |
Sbjct 589 GGCTAAGAAAACAATC-GCCGTTAAACCTAAGACTGCTGCTGCTAAGAAAGTGACCGCGA 647
Query 660 AGGCTAAGGCTAAGGTTGTTCCTCGTGCCACTGCTGCTGCACCTAAGAGGAAAGCTGTGG 719
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
Sbjct 648 AGGCTAAGGCTAAGCCCGTTCCTCGTGCCACTGCTGCTGCAACTAAGAGGAAAGCTGTTG 707
Query 720 ATGCGAAGCCCAAGTCTAAGGGTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTAACAT 779
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 708 ATGCGAAGCCCAAGGCTAAGGCTAGACCAGCCAAGGCAGCCAAAACGGCCAAGGTTACAT 767
Query 780 CGCCGGCGAAGAAAGCTGTTGCTGCGAAAAAGAAAGTTGCTACGGTGGCCACGAAGAAGA 839
| ||||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 768 CTCCGGCTAAGAAAGCTGTTGCTGCCACGAAGAAAGTTGCTACGGTGGCCACAAAGAAGA 827
Query 840 AGACTCCGGTGAAGAAGGTTGTGAAGCCAAAGACGGTGAAGTCTCCAGCAAAGAGGGCTT 899
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 828 AGACTCCGGTTAAGAAGGTTGTGAAGCCAAAGACGGTTAAGTCTCCAGCAAAGAGGGCTT 887
Query 900 CTTCTAGGGTGAAGAAGTAAAATTAGGGTTTGTAGGTAGAAGAAGGGTTAACGATAGTTG 959
|||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 888 CTTCTAGGGTTAAGAAGTGAAGTTAGGGTTTGTAGGTAGAAGAATGGTTAACGATAGTT- 946
Query 960 GTTAGTCTTGTATAATTCAATGATCCTTTTAAGTGACTT-GTTTGCTTTTCTTCTTTTCA 1018
| || ||||||||||||||| ||| ||| | | ||||| ||||||||||||||||| ||
Sbjct 947 -T-AGACTTGTATAATTCAATCATC-TTT-ATGCGACTTTGTTTGCTTTTCTTCTTT-CA 1001
Query 1019 GTGTTCTTGTAATTCACAGTTGCTTTGGTCTCTATCCCTTAAAAATCATATATAGATTTC 1078
|||||||||| |||||||||| |||||| || | |||||||| |||||||||||||||
Sbjct 1002 GTGTTCTTGTTATTCACAGTTCCTTTGGACT--ACCCCTTAAA--TCATATATAGATTTC 1057
Query 1079 ATCAATGAAGCAAAATCGAGTTTCTTTGCAGCT 1111
|||||||||||||| ||||||||||||||||||
Sbjct 1058 ATCAATGAAGCAAACTCGAGTTTCTTTGCAGCT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5