BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470704
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06820.1 | Symbols: CRTISO, CCR2 | carotenoid isomerase | ch... 2863 0.0
> AT1G06820.1 | Symbols: CRTISO, CCR2 | carotenoid isomerase |
chr1:2092946-2096232 REVERSE LENGTH=1999
Length=1999
Score = 2863 bits (1550), Expect = 0.0
Identities = 1715/1793 (96%), Gaps = 17/1793 (1%)
Strand=Plus/Plus
Query 2 CAACCATGAATTTGTGTTTTCAAAATCCCGTAAAGTGTGGTAG-TTGTTTGTTCTCCGCG 60
|||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 8 CAACCATGGATTTGTGTTTTCAAAATCCCGTAAAGTGTGGT-GATCGTTTGTTCTCCGCA 66
Query 61 TTGATTA-C-CT-CGAATTACAAGCTGGGTACTTGGAATTTAGGGTTTAATGGTCGAGTT 117
|||| || | || || |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 67 TTGAATACCTCTACGTATTACAAGCTGGGTACTTCGAATTTAGGGTTTAATGGTCCAGTT 126
Query 118 TTAGAGAATCGGAAGAA-CA-TA-AAGCCGCCT-G--TGGTTACAGTGAAATCCGTTTCT 171
||||||||||||||||| | | |||| |||| | |||||||||||||||||||||||
Sbjct 127 TTAGAGAATCGGAAGAAGAAGAAGAAGCTGCCTCGTATGGTTACAGTGAAATCCGTTTCT 186
Query 172 TCAAGTGTGGTTG---GTACCGTAGAGGGGACCAAGAGAGAT-GA-AACA-AGTGTGTAC 225
||||||||||||| |||||||| | ||||| ||||||||| || | | ||| |||||
Sbjct 187 TCAAGTGTGGTTGCTAGTACCGTACAAGGGACGAAGAGAGATGGAGGAGAGAGTCTGTAC 246
Query 226 GACGCCATTGTTATCGGTTCTGGGATTGGTGGATTGGTTGCTGCGACTCAGCTAGCTGTT 285
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 247 GACGCCATTGTTATCGGTTCTGGGATTGGTGGATTAGTTGCTGCGACTCAGCTAGCTGTG 306
Query 286 AAAGAAGCTAGGGTTTTGGTTCTTGAGAAGTATTTGATTCCTGGTGGGAGCTCTGGTTAT 345
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
Sbjct 307 AAAGAAGCTAGGGTTTTAGTTCTTGAGAAGTATTTGATTCCTGGTGGCAGCTCTGGTTTT 366
Query 346 TACGAAAGAGATGGTTATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGTGAT 405
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 TACGAGAGAGATGGATATACTTTTGATGTTGGCTCTTCTGTCATGTTTGGTTTCAGCGAT 426
Query 406 AAGGGGAACCTAAACTTGATTACTCAGGCATTGAAGGCAGTTGGTCGGAAGATGGAGGTT 465
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 427 AAGGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTT 486
Query 466 ATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATCTTTCTGTTCGGATTCAT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATCTTTCTGTTCGGATTCAT 546
Query 526 AGAGAATACGATGATTTCATCGCTGAGCTTACCAGCAAGTTTCCTCACGAAAAGGAAGGG 585
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 547 AGGGAATACGATGATTTCATCGCTGAGCTTACGAGCAAGTTTCCTCACGAAAAGGAAGGG 606
Query 586 ATCCTCGCATTCTATGGCGTCTGCTGGAAGATCTTCAACTCATTGAACTCTCTGGAACTA 645
||||| | ||||||||| | ||| |||||||||||||||||||||||||| |||||||||
Sbjct 607 ATCCTTGGATTCTATGGTGACTGTTGGAAGATCTTCAACTCATTGAACTCCCTGGAACTA 666
Query 646 AAGTCTCTAGAAGAGCCTATCTACCTTTTTGGACAGTTCTTTCAGAAGCCGCTTGAATGC 705
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGTCACTAGAAGAGCCTATCTACCTTTTTGGACAGTTCTTTCAGAAGCCGCTTGAATGC 726
Query 706 CTGACACTCGCTTATTACTTGCCCCAAAATGCTGGAGCTATAGCTCGCAAGTACATAAAG 765
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 727 TTGACACTCGCTTATTACTTGCCCCAAAATGCTGGGGCTATAGCTCGGAAGTACATAAAG 786
Query 766 GATCCTCAATTATTGTCTTTCATTGATGCAGAGTGTTTCATCGTGAGCACAGTCAATGCT 825
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 787 GATCCTCAATTATTGTCTTTCATTGATGCAGAGTGTTTCATTGTGAGCACAGTCAATGCT 846
Query 826 TTGCAGACGCCAATGATCAATGCAAGTATGGTTTTATGTGACAGGCACTATGGAGGAATT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTGCAGACGCCAATGATCAATGCAAGTATGGTTTTATGTGACAGGCACTATGGAGGAATT 906
Query 886 AACTACCCGGTTGGTGGAGTTGGTGGGATTGCCAAGTCTCTGGCAGAAGGACTTGTTGAT 945
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 907 AACTACCCGGTTGGTGGAGTTGGTGGGATTGCCAAGTCTTTGGCAGAAGGGCTTGTTGAT 966
Query 946 CAAGGCAGTGAAATACTCTACAAGGCTAATGTAAAAAGTATAATACTTGATAATGGAAAG 1005
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 967 CAAGGCAGTGAAATACAATACAAGGCTAATGTAAAAAGTATAATACTTGATCATGGAAAG 1026
Query 1006 GCGGTTGGTGTAAGGCTAGCAGATGGAAGAGAATTTTTCGCTAAGACGATAATTTCAAAT 1065
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GCAGTTGGTGTAAGGCTAGCAGATGGAAGAGAATTTTTCGCTAAGACGATAATTTCAAAT 1086
Query 1066 GCTACAAGATGGGATACGTTTGGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGCAGAA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1087 GCTACAAGATGGGATACGTTTGGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAA 1146
Query 1126 GAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTT 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTT 1206
Query 1186 AAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGGACGATTGG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 AAAGCAGAGGTTCTCCCTCCAGATACAGATTGCCATCATTTTGTGCTCGAGGACGATTGG 1266
Query 1246 AAGAATCTGGAGGAGCCTTATGGCAGTATATTCCTCAGCATTCCAACCATTCTTGATCCA 1305
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1267 AAGAATCTGGAGGAGCCTTATGGCAGTATTTTCCTCAGCATTCCAACCATTCTTGATTCA 1326
Query 1306 TCTCTGGCTCCAAATGGTCGACATATACTTCATATATTTACAACTTCGTCCATCGAGGAT 1365
||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1327 TCTTTGGCTCCAGATGGTCGACATATACTTCACATATTTACAACTTCGTCCATTGAGGAT 1386
Query 1366 TGGGAGGGACTCCCTCCAAAAGAGTATGAGGCGAAAAAGGAAGATGTGGCAGCTAGAATA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TGGGAGGGACTCCCTCCAAAAGAGTATGAGGCGAAAAAGGAAGATGTGGCAGCTAGAATA 1446
Query 1426 ATCCAGAGACTAGAGAAAAAACTGTTTCCAGGGCTCAGTTCATCTATTACGTTCAAGGAG 1485
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ATCCAGAGACTAGAGAAAAAATTGTTTCCAGGGCTCAGTTCATCTATTACGTTCAAGGAG 1506
Query 1486 GTGGGAACACCAAGAACACACAGACGGTTTCTTGCGAGGGATAAGGGAACTTATGGGCCA 1545
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1507 GTGGGAACACCAAGAACACACAGACGATTTCTTGCGAGGGATAAGGGAACTTATGGGCCA 1566
Query 1546 ATGCCTAGAGGAACCCCAAAAGGTTTATTAGGCATGCCGTTCAATACAACGGCTATAGAT 1605
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1567 ATGCCTAGAGGAACCCCGAAAGGTTTATTAGGCATGCCATTCAATACAACGGCTATAGAT 1626
Query 1606 GGTCTATACTGCGTGGGGGATAGTTGCTTTCCTGGTCAGGGAGTTATAGCTGTGGCTTTC 1665
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1627 GGTCTATACTGCGTGGGGGATAGTTGTTTTCCTGGCCAGGGAGTTATAGCTGTGGCTTTT 1686
Query 1666 TCAGGAGTGATGTGTGCTCATCGGGTAGCTGCTGATATTGGGCTTGAGAAGAAATCACGG 1725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 TCAGGAGTGATGTGTGCTCATCGGGTAGCTGCTGATATTGGGCTTGAGAAGAAATCACGA 1746
Query 1726 GTACTTGATGTTGGCCTTCTTGGTTTACTTGGGTGGCTAAGGACACTCGCATA 1778
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1747 GTACTTGATGTTGGCCTTCTTGGTTTACTTGGTTGGCTAAGGACACTCGCATA 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5