BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470705

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06830.1 | Symbols:  | Glutaredoxin family protein | chr1:20...   706    0.0  


> AT1G06830.1 | Symbols:  | Glutaredoxin family protein | chr1:2097151-2097655 
FORWARD LENGTH=505
Length=505

 Score =  706 bits (382),  Expect = 0.0
 Identities = 463/501 (92%), Gaps = 9/501 (2%)
 Strand=Plus/Plus

Query  1    CTTCTTCTTCTTCACCTTATTCAAGAAAATGGACAAAGTTATGAGAATGTCGTCCGAAAA  60
            |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  11   CTTCTTCTTCTTCACCTTATGCAAGATAATGGACAAAGTTATGAGAATGTCGTCCGAAAA  70

Query  61   AGGGGTGGTTATATTTAGCAAGAGCTCTTGTTGTTTGTCCTATGCAGTTCAAGTTCTCTT  120
            ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  71   AGGGGTGGTTATATTTACCAAGAGCTCCTGTTGTTTGTCCTATGCGGTTCAAGTTCTCTT  130

Query  121  CCAAGATCTTGGGGTTAACCCTAAGATCCACGAGATTGATAAGGACCCCGAATGCCGAGA  180
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  131  CCAAGATCTTGGTGTTAACCCTAAGATCCACGAGATTGATAAGGACCCTGAATGCCGAGA  190

Query  181  GATAGAGAAGGCCCTAATGAGGCTAGGGTGTTCAAAACCGGTCCCAGCCGTCTTCATTGG  240
            |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  191  GATAGAGAAGGCTCTTATGAGGCTAGGGTGTTCAAAGCCGGTCCCAGCCGTCTTCATTGG  250

Query  241  TGGCAAGCTCGTTGGTTCGACAAACGAAGTAATGTCGATGCACTTAAGCAGCTCACTTGT  300
            ||||||||||||||||||||| |||||||||||||| |||||| |||||||||| || ||
Sbjct  251  TGGCAAGCTCGTTGGTTCGACCAACGAAGTAATGTCCATGCACCTAAGCAGCTCGCTCGT  310

Query  301  TCCCCTAGTGAAGCCATATCTGTGTTAAACAACAAAGAAAGAAGGTGTTTATATATGAAA  360
            ||||||||||||||||||| | ||||||||||||| ||| || | | |||||  || |  
Sbjct  311  TCCCCTAGTGAAGCCATATTTATGTTAAACAACAACGAAGGA-G-TATTTATG-AT-A--  364

Query  361  TTAATTAGTTATGGATATGTCATTCAATAAGGAAGAAAATTGAGCCAAATCTTTGTAATG  420
            |||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct  365  TTAATTAGCTATGTATATGTTATTCAATAAGGAACAAAATTGAGCCAAATCTTTGTAATG  424

Query  421  TGTTTTTTGGTATTATTATTGATTGTGTAAC-TTGGGAAAGTG--CGTATAATTGTAAGA  477
            ||||||||||||||||||||| |||| |||| |||||||||||  ||||||||| |||||
Sbjct  425  TGTTTTTTGGTATTATTATTGGTTGTATAACATTGGGAAAGTGTACGTATAATTATAAGA  484

Query  478  TTGTTATATTGATTCGAAGGT  498
             ||||||||||||||||||||
Sbjct  485  CTGTTATATTGATTCGAAGGT  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5