BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470709
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family p... 2257 0.0
> AT1G06870.1 | Symbols: | Peptidase S24/S26A/S26B/S26C family
protein | chr1:2108593-2110986 FORWARD LENGTH=1687
Length=1687
Score = 2257 bits (1222), Expect = 0.0
Identities = 1513/1642 (92%), Gaps = 65/1642 (4%)
Strand=Plus/Plus
Query 2 AGACTCTCTCTGCTATCGACC-AAACCTTCTCCTCTCCTCTGGGAGATCTCCAGCTTCTT 60
|||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 29 AGACTCTCTCTGCTTTCGACCAAAACCTTCTCCTCTCCTCTGGGAGATCTCCATCTTCTT 88
Query 61 CGCGCCTTCGCTT------C-----C----ACTCGATCTCGCCGGCGGCATAAGATCTCC 105
||| |||||||| | | |||||||||||||||||| | ||| |||||
Sbjct 89 CGCTTCTTCGCTTCCCCGCCTGAAACAATTACTCGATCTCGCCGGCGGAACAAGCTCTCC 148
Query 106 GTTTATCTTTCCGGCAGATCGACTCTTCCAATTTCCGGTTAATTTCC--T-TAGGCCTT- 161
|||| ||||||||||||||||| |||||||| |||| || | |||| | |||| |||
Sbjct 149 GTTTCTCTTTCCGGCAGATCGATTCTTCCAA-TTCC--TT-A-TTCCTTTCTAGGTCTTC 203
Query 162 -AGAAAAAACCCTTACTTTCATCAAAATCTGCATTTCATGGCGATTAGGGTTACCTTCAC 220
|| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 204 CTTAAGAAACCCTTACTTTCTTCAAAATCTGCATTT-ATGGCGATTAGGGTTACCTTCAC 262
Query 221 CTACTCCAGCTATGTTGCTAGGAGCATTGCTTCTTCCGCCGGGACTCGTGTCGGCACCGG 280
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 263 CTACTCCAGCTATGTTGCTAGGAGCATTGCTTCATCCGCCGGGACTCGTGTCGGTACCGG 322
Query 281 CGACGTTCGCTCATGCTTCGAATCATGGGTTCGTCCCAGATTCTGCGGCCACAATCAGAT 340
||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 323 CGACGTTAGATCATGCTTCGAAACATGGGTTCGTCCCAGGTTCTGCGGCCACAATCAGAT 382
Query 341 ACCCGATATTGCTGATAAATCTCCCGGATCCAACACA-----T----GCTCAAGCCCTCG 391
||| ||||||| ||||||||||||||||||||||||| | ||||| |||||||
Sbjct 383 ACCAGATATTGTTGATAAATCTCCCGGATCCAACACATGGGGTCCAAGCTCAGGCCCTCG 442
Query 392 TGCTCGACCAGCTTCATCGATGTATAGCACCATTGCGAGGGAACTCCTCGAAGAAGGAAG 451
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 443 TGCTCGACCAGCTTCATCAATGTATAGCACCATTGCGAGGGAAATCCTCGAAGAAGGCTG 502
Query 452 CAAGAGTCCACTTGTGTTGGGTATGATCTCTCTCATGAATTTGACAGGAGCTGCTCCACA 511
||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 503 CAAGAGTCCACTTGTCTTGGGTATGATCTCTCTCATGAATTTGACTGGA---GCTCCACA 559
Query 512 GCTCTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTTATCCCGTT 571
| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 560 GTTTTCGGGTATGACCGGTCTCGGGATCTCTCCCTTTAAGACTTCTTCTGTCATCCCGTT 619
Query 572 CCTTAGGGGCTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGC 631
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CCTTAGGGGTTCCAAGTGGATGCCTTGTAGTATTCCGGCGACGTTATCAACGGATATTGC 679
Query 632 TGAGGTTGATAGAGGAGGAAAGGTGTGTGATGCTAAAGTGAAGTTGGAGTTGAGTGATAA 691
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 680 TGAGGTTGATAGAGGAGGAAAGGTCTGTGATCCTAAAGTGAAGTTGGAGTTGAGTGATAA 739
Query 692 AGTCTCTAATGCTGGTAACGGTTGGGTTAATAAGCTGTTGAATATCTGCTCGGAAGATGC 751
|||||| |||| ||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 740 AGTCTCGAATGGTGGAAACGGATGGGTTAATAAGCTGTTGAATATCTGCTCGGAGGATGC 799
Query 752 TAAGGCAGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCGTTGGCTGAGCC 811
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 800 TAAGGCTGCTTTCACGGCGGTTACTGTTTCTCTCCTTTTCCGATCGGCTTTGGCCGAGCC 859
Query 812 AAAGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATGGC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 AAAGTCTATACCTTCAACATCTATGCTTCCTACTCTCGATGTGGGTGATCGTGTTATAGC 919
Query 872 TGAGAAGGTCTCATACCTTTTCAGAAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGC 931
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 CGAGAAGGTCTCATACTTTTTCAGGAAGCCAGAGGTTTCAGACATAGTTATCTTCAAGGC 979
Query 932 TCCTCCTATTTTGGTGGAACATGGTTACAGTTGTACTGATGTTTTTATAAAAAGGATAGT 991
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 980 TCCTCCTATTTTGGTGGAACATGGTTACAGTTGTGCTGATGTTTTCATAAAAAGGATAGT 1039
Query 992 TGCTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TGCTAGCGAAGGTGACTGGGTTGAAGTTTGTGATGGAAAGCTCTTAGTAAATGACACTGT 1099
Query 1052 TCAAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCC 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 TCAAGCAGAGGATTTTGTCTTAGAGCCAATTGACTATGAAATGGAACCAATGTTTGTCCC 1159
Query 1112 TGAAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTG 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 TGAAGGTTATGTCTTCGTCCTAGGAGACAACCGCAACAAAAGCTTTGATTCTCATAACTG 1219
Query 1172 GGGTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTATTTCGCTATTGGCCACCAAG 1231
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1220 GGGTCCACTTCCAATAAAGAACATCATAGGGAGATCTGTGTTTCGCTATTGGCCACCAAG 1279
Query 1232 CAAAGTGTCAGACATCATACACCATGAACAAGTTATCCAAAAGAGAGCTGTTGATGTTTC 1291
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1280 CAAAGTGTCAGACATAATACACCATGAACAAGTTAGCCAAAAGAGAGCTGTTGATGTATC 1339
Query 1292 TTGACCAAAGCAGATGGT-TCTTAGGATTAAGCAGAAAATTTGATTAGACGAGCTGTGCC 1350
|||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1340 TTGACCAACGCAGATGGTATCTTAGGATTAAGCAGAAAATTTGATTAGATGAGCTGTGCC 1399
Query 1351 ATGCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTTTTTCTTCCTGTCTAGGCTTCT 1410
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1400 ATGCCAACCATTTTGGCGCTGAAGGCAACAGAGCAATTCTTTCTTCCTGTCTAGGCTTG- 1458
Query 1411 ATGGCGGACATGGAATGCAATGGGAAATCCATa-aaaaa-a---------TT--T-TT-- 1454
||||||||||||||||||| ||||||||||||| ||||| | || | ||
Sbjct 1459 ATGGCGGACATGGAATGCACTGGGAAATCCATATAAAAAGAACAAGAAAATTGATATTTT 1518
Query 1455 -GCTTTTGATTCTTT--GATGTGTTGAAACCTAAATGCAACCAGTGTAATTGGCAGTCGC 1511
||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1519 TGCTTT-GATTTTTTTTGATGTGTTGAAACCTAAATGCATCCAGTGTAATTGGCAGTAGC 1577
Query 1512 TGTCAAACATAAAAGGGTGAACTATCTTTTT-GAGTATTATCTAATGTGAAAAATCCTGT 1570
|||||||||||||||||| |||| ||||||| ||||||| | |||||||| ||||||||
Sbjct 1578 TGTCAAACATAAAAGGGTAAACTTTCTTTTTTGAGTATT-T--AATGTGAAGAATCCTGT 1634
Query 1571 AAACGTTCTGTTCTCAAGCTCT 1592
||||||||||||||||||||||
Sbjct 1635 AAACGTTCTGTTCTCAAGCTCT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5