BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470711
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06890.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2436 0.0
AT2G30460.1 | Symbols: | Nucleotide/sugar transporter family p... 1192 0.0
> AT1G06890.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:2111563-2114601 REVERSE LENGTH=1506
Length=1506
Score = 2436 bits (1319), Expect = 0.0
Identities = 1445/1501 (96%), Gaps = 28/1501 (2%)
Strand=Plus/Plus
Query 1 CTATCAAACGTAGAAAGCGAAAACTATC-TTCTTCctctctctctctctcACTATTTTTC 59
|||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||
Sbjct 1 CTATCAAACGTAGAAAGCGAAAACTATCTTTCTT-CT-TC-CTCTCTCTCACTATTTTTC 57
Query 60 TCTGTACGGTGGTGAGTGAAGACCATC-AAAATTGCAGAAAATAGGCTTAATCTGAATCT 118
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 58 TCTGTACGGTGGTGAGTGAAGACCATCAAAAATTGCAGAAAATAGGCTTAATCTGAATCT 117
Query 119 CTTCTCCTCCGTCGATGTTTTGAATTCTCTCTGGTTCTCCAATTCTCCTCTCGAGCTGCC 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTTCTCCTCCGTCGAAGTTTTGAATTCTCTCTGGTTCTCCAATTCTCCTCTCGAGCTGCC 177
Query 179 TTAAGCTTCGCATTTACGTTTAATTTTTTG-GTGGATTAGATCATCGTAGATCGTGATTG 237
||||||||||||||||||||| | || || | || ||||||||||||||||||||||
Sbjct 178 TTAAGCTTCGCATTTACGTTT-ACGTTATGCACGAATGAGATCATCGTAGATCGTGATTG 236
Query 238 AAGAAGCGGGAGATAAATTAGGAGAGCGAAGATGAGCGAGGGCCAGAAGTTCCAGTTGGG 297
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGAAGCGAGAGATAAATTAGGAGAGCGAAGATGAGCGAGGGCCAGAAGTTCCAGTTGGG 296
Query 298 AACAATCGGCGCTTTGAGTTTGTCCGTTGTGTCGTCTGTCTCCATCGTGATCTGTAACAA 357
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 297 AACAATCGGCGCTTTGAGTTTGTCCGTTGTGTCATCTGTCTCGATTGTGATCTGTAACAA 356
Query 358 AGCACTTATTAGCACCCTTGGCTTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTT 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGCGCTTATTAGCACCCTTGGCTTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTT 416
Query 418 GGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTCACATTTTGTTCCCTTCATGTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTT 476
Query 478 TGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAA 536
Query 538 CCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGATGACAAAACTAGCAATCATCCC 597
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 537 CCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGATGACTAAACTAGCTATCATCCC 596
Query 598 CTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATCCAGTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTGCACTGTTCTCTTGGAGACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATCCAGTT 656
Query 658 TTCATTAACCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTCATTAACCATCCTTCTCCTTGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAA 716
Query 718 TATGCTGGGTTCAGTCTTGTCGCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTAT 777
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TATGCTGGGTTCTGTCTTGTCGCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTAT 776
Query 778 GACAAATACTATCCAGAAGAAGTTCAAAGTTTCATCCACGCAACTTCTGTATCAGTCTTG 837
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 GACAAATACCATCCAGAAGAAGTTCAAAGTTTCATCCACGCAGCTTCTGTATCAGTCTTG 836
Query 838 CCCGTATCAAGCAATCACTCTTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAA 897
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCCATATCAAGCAATCACTCTTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAA 896
Query 898 TCAGAACGTGTTTGCTTTCAAGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCCTG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 TCAGAACGTGTTTGCTTTCAAGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCTTG 956
Query 958 CCTCATATCAGTCTCTGTAAACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CCTCATATCAGTCTCTGTAAACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGT 1016
Query 1018 CACATATCAGGTTCTGGGACATCTCAAAACATGCCTGGTTCTAGCATTTGGCTATGTGTT 1077
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CACATATCAGGTTCTAGGACATCTCAAAACATGCCTGGTTCTAGCATTTGGCTATGTGTT 1076
Query 1078 GCTGCGAGACCCATTCGACTGGCGCAACATTCTCGGTATTCTGGTGGCTGTGATTGGAAT 1137
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 GCTGCGAGACCCATTCGACTGGCGCAACATTCTCGGTATTCTAGTGGCTGTGATTGGAAT 1136
Query 1138 GGTTGTTTATTCCTATTACTGCTCGATTGAGACTCAGCAGAAGGCAAGCGAAACCTCAAC 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1137 GGTTGTTTATTCCTATTACTGCTCGATTGAGACTCAGCAGAAGGCAAGTGAAACCTCAAC 1196
Query 1198 TCAGTTGCCTCAGATGAAAGAGAGCGAGAACGATCCGCTAATAGCAGCTGAAAATGGAAG 1257
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 TCAGTTGCCTCAGATGAAAGAGAGCGAGAAGGATCCGCTAATAGCAGCTGAAAATGGAAG 1256
Query 1258 CGGAGTGTTATCAGATGGTGGAGGGGGAGTGCCGCAAAAGACGGTGGCTCCTGTATGGAA 1317
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 1257 CGGAGTGTTATCAGATGGCGGCGGGGGAGTGCAGCAAAAGACGGTGGCTCCTGTATGGAA 1316
Query 1318 CTCAAATAAAGATTTTCAAGCCTAAA-GCTTTGATCATCGCTAtttttttttATATAATA 1376
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1317 CTCAAATAAAGATTTTCAAGCCTAAAAGCTTTGATCATCGCTATTTTTTT--ATATAATA 1374
Query 1377 CCAA-CTCTCTTTGTATCAGATTTGTCCCCCCaaaaaaa-aCAAACTTTTTAATTTCTCt 1434
||| |||||||||||| | |||||| ||||||| ||||||||||||||||||||
Sbjct 1375 TCAAACTCTCTTTGTAT----T--GTCCCC--AAAAAAACACAAACTTTTTAATTTCTCT 1426
Query 1435 ttttttt-------GTTCCCTTTT-AAATATGCATAGCAGAGAAGTAGGGGAGACTGAAA 1486
||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1427 TTTTTTTTTTTTTTGTTCCCTTTTTAAATATGCATAGCAGAGAAGTAGGGGAGACTGAAA 1486
Query 1487 A 1487
|
Sbjct 1487 A 1487
> AT2G30460.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr2:12976146-12978868 REVERSE LENGTH=1471
Length=1471
Score = 1192 bits (645), Expect = 0.0
Identities = 950/1095 (87%), Gaps = 30/1095 (3%)
Strand=Plus/Plus
Query 261 GAGCGAAGATGAGCGAGGGCCAGAAGTTCCAG-TTGGGAACAATCGGCGCTTTGAGTTTG 319
|||| || |||||||| | ||||||||||||| || |||||||||||||||||||||||
Sbjct 99 GAGCAAATATGAGCGATGCCCAGAAGTTCCAGCTT-GGAACAATCGGCGCTTTGAGTTTA 157
Query 320 TCCGTTGTGTCGTCTGTCTCCATCGTGATCTGTAACAAAGCACTTATTAGCACCCTTGGC 379
||||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||
Sbjct 158 TCCGTTGTGTCCTCTGTTTCGATCGTGATCTGTAACAAGGCCCTTATTAGCACCCTTGGT 217
Query 380 TTCACATTCGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACATTTTGTTCCCTTCAT 439
|||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 218 TTCACATTTGCAACTACTTTGACAAGCTGGCATCTTTTGGTGACATTTTGTTCACTTCAT 277
Query 440 GTGGCATTATGGATGAAGATGTTCGAACACAAGCCTTTTGATCCACGAGCTGTGATGGGA 499
|||||||||||||||||| | || || |||||||||||||||||||||||||| |||||
Sbjct 278 GTGGCATTATGGATGAAGTTTTTTGAGCACAAGCCTTTTGATCCACGAGCTGTCCTGGGA 337
Query 500 TTTGGCATATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCT 559
||||| |||| ||||| |||||||| ||| |||| || |||||| |||| |||||||||
Sbjct 338 TTTGGTGTATTAAATGGTATATCCATTGGATTATTAAATCTCAGCTTGGGTTTTAATTCT 397
Query 560 GTCGGTTTTTACCAGATGACAAAACTAGCAATCATCCCCTGCACTGTTCTCTTGGAGACC 619
|| ||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||
Sbjct 398 GTTGGTTTTTACCAGATGACAAAACTTGCAATCATCCCCTGTACTGTTGTCTTAGAGACC 457
Query 620 CTCTTCTTCAGGAAA-AAGTTCAGTCGAAAAATCCAGTTTTCATTAACCATCCTTCTCCT 678
||||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 458 ATCTTCTTCA-GAAAGATGTTCAGTCGAAAAATCCAGTTTTCATTAGTCATCCTTCTCCT 516
Query 679 TGGTGTTGGAATTGCAACCGTCACAGATCTTCAACTTAATATGCTGGGTTCAGTCTTGTC 738
||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 517 TGGTGTTGGAATTGCAACCGTAACAGATCTCCAGCTTAATATGCTGGGTTCTGTCTTGTC 576
Query 739 GCTGCTGGCTGTTGTCACAACTTGTGTTGCTCAAATTATGACAAATACTATCCAGAAGAA 798
||| ||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 577 GCTACTGGCTGTTATCACAACTTGTGTTGCCCAAATTATGACCAATACGATCCAGAAGAA 636
Query 799 GT-TCAAAGTTTCATCCACGCAACTTCTGTATCAGTCTTGCCCGTATCAAGCAATCACTC 857
| | || ||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 637 ATAT-AAGGTTTCATCCACCCAACTTCTGTATCAGTCTTGCCCATATCAAGCAATCACAC 695
Query 858 TTTTCGTCACTGGGCCATTTTTAGATGGGCTCCTAACCAATCAGAACGTGTTTGCTTTCA 917
|||| || ||||| |||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 696 TTTTTGTTACTGGCCCATTTTTAGATGGTCTCTTAACCAACCAGAACGTGTTTGCTTTCA 755
Query 918 AGTACACTTCTCAAGTAGTGTTCTTCATCGTCCTGTCCTGCCTCATATCAGTCTCTGTAA 977
| ||||| |||||||| ||||||||||||||| |||||||||||||||| || || ||||
Sbjct 756 AATACACGTCTCAAGTTGTGTTCTTCATCGTCTTGTCCTGCCTCATATCTGTTTCAGTAA 815
Query 978 ACTTCAGCACATTTCTTGTCATTGGAAAAACATCTCCTGTCACATATCAGGTTCTGGGAC 1037
|||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 816 ACTTCAGCACGTTTCTCGTCATTGGAAAGACATCTCCTGTCACTTATCAGGTTCTAGGAC 875
Query 1038 ATCTCAAAACATGCCTGGT-TCTAGCATTTGGCTATGTGTTGCTGCGAGACCCATTC-GA 1095
|||| ||||||||| | || | |||||||||| ||| | |||||| |||| ||||| |
Sbjct 876 ATCTAAAAACATGCTTAGTGT-TAGCATTTGGGTATCTTTTGCTGAAAGACGCATTCAG- 933
Query 1096 CTGGCGCAACATTCTCGGTATTCTGGTGGCTGTGATTGGAATGGTTG-TTTATTCCTATT 1154
||||||||||||||| |||||||| || || |||||||||||||| | ||||||||||||
Sbjct 934 CTGGCGCAACATTCTTGGTATTCTTGTCGCCGTGATTGGAATGGT-GCTTTATTCCTATT 992
Query 1155 ACTGCTCGATT-GAGACTCAGCAGAAGGCAAGC-GAAACCTCAACTCAGTTGCCTCAGAT 1212
||||| | | | || || || |||||||| | | ||||| |||||||| |||||||||||
Sbjct 993 ACTGCAC-ACTCGAAACCCAACAGAAGGCCA-CAGAAACATCAACTCAATTGCCTCAGAT 1050
Query 1213 GAAAGAGAGCGAGAACGATCCGCTAAT-AGCAGCTGAAAATGGAAGCGGAGTGTTATCAG 1271
| | || | |||||| ||||||||| | || || ||||| || |||||| || ||||||
Sbjct 1051 GGATGAAAACGAGAAAGATCCGCTAGTTAGT-GCGGAAAACGGGAGCGGATTGATATCAG 1109
Query 1272 ATGGTGGAGGGGGAGTGCCGCAAAAGACGGTGGCTCCTGTATGGAACTCAAATAAAGATT 1331
| ||||| ||| ||||| | | | |||||||||||| ||||| |||||||
Sbjct 1110 ACAATGGAG------TGC---AAAAG-CAG-GA-TCCTGTATGGAATTCAAACAAAGATT 1157
Query 1332 TTCAAGCCTAAAGCT 1346
||||||| || ||||
Sbjct 1158 TTCAAGCGTAGAGCT 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5