BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470713
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06920.1 | Symbols: ATOFP4, OFP4 | ovate family protein 4 | ... 1099 0.0
> AT1G06920.1 | Symbols: ATOFP4, OFP4 | ovate family protein 4
| chr1:2124854-2125801 REVERSE LENGTH=948
Length=948
Score = 1099 bits (595), Expect = 0.0
Identities = 831/938 (89%), Gaps = 44/938 (5%)
Strand=Plus/Plus
Query 1 ATGAGGAATTATAAGTTCAGATTGTCAGCTATGATCCCAAGTCG-CTGGTTCCACAAGCT 59
|||||||| |||||||| |||||||||| ||||| ||||||| | ||||||||||||||
Sbjct 1 ATGAGGAACTATAAGTTAAGATTGTCAGTTATGAGCCCAAGT-GAATGGTTCCACAAGCT 59
Query 60 CAAAAACATGACCAGGCCTAGAAATAAA-CATCCTCTTCCTTC-TTACTCCTTAAACACT 117
||| |||||||| | |||||||| ||| ||| ||||||| || ||||||| ||||||||
Sbjct 60 CAAGAACATGACAAAACCTAGAAA-AAAGCATTCTCTTCC-TCTTTACTCCATAAACACT 117
Query 118 ACCAAGAAGAGAAAACCTTCCTCTGAGTCTAAGTCTCTTCCTCACTCTTCAACCTCTTAC 177
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 118 ACCAAGAAGAGAAAACCTTCCTCTGAGTCAAAGTCTCTTCCTTACTCTTCAACTTCTTAC 177
Query 178 TTCTCCAATAGGTCA----CA--CACTTCCTTTGAATCTAAGATCCTTCAAATTTCACCA 231
|||| |||||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct 178 TTCTTCAATAGGTCACGCTCACGCACATCCTTTGAATCTAGGATCCTTCAAATTTCACCA 237
Query 232 AGAAACTCTCCTCACAAGATACAGAGCAAAAGAAAGACTGTTTACAAGCCTTCTCCTCCT 291
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAAACTCTCTTCACAACATACAGAGCAAAAGAAAGACTGTTTACAAGCCTTCTCCTCCT 297
Query 292 TCCACTTCT-TCTGTGTCTGCAGGTTTTAACAAAA-A---GA--AGA-TCA-AATT-TC- 340
||| ||||| | ||| ||||||||||||||||||| | | | | || ||| ||
Sbjct 298 TCCTCTTCTAT-TGTATCTGCAGGTTTTAACAAAACATTTCATCAAAGCCATGATTCTCT 356
Query 341 ATC-G---AAACCAA---G--ATTC-TTTC-TCTGAAGATGATGTCATCATCGACATGAA 389
|| | |||| | | || |||| |||||||||||| | ||||||||||||||
Sbjct 357 CTCTGCCTCTTCCAACTTGAAAGTCATTTCTTCTGAAGATGATATTATCATCGACATGAA 416
Query 390 TAACAGAGATTTCAAGAAGAAAA-TGTTCAAAGAGATCAATAAGTTTGATTCAACGGAGA 448
||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 417 TAATAGAGATTTCAAGAAGAAAACT-TTCAAAGAGATCACGAAGTTTGATTCAACGGAGA 475
Query 449 AAGCATGTCCTGCAAGTAACCGAACCAAGGAAACACTTATAACTCATCATCTATCTGTGA 508
|||| |||| |||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 476 AAGCCTGTCGTGCAAGTAACCGAACCAAGGAAACACATATACCTCATCATCTCTCTGTGA 535
Query 509 AGGTCAATaaagagaaagaagatgaagaagaggaagatgcatgtagaatcc-agaagaaa 567
|||||| |||||||||||||||| |||||||||||||||||| ||| || ||||||||
Sbjct 536 AGGTCAGTAAAGAGAAAGAAGAT---GAAGAGGAAGATGCATGTCGAA-CCAAGAAGAAA 591
Query 568 catcagaaaaCATTAGTTTCCGGTGGAAGAAGATCATCAGATAAATCTACAAGGATAAAA 627
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 592 CATCAGAAAACATTAGTTTCTAGTGGAAGAAGATCATCAGCTAAATCTCCAAGGATAAAG 651
Query 628 CTCAGAGTGAGTTCTCCTAGAATTCAAGTCTCACCTCGTAGAAGCAAATCGAGATCACAG 687
||||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 652 CTCAGAGCGAGATCTCCTAGAATTCAAGTCTCGCCTCGTAGAAGCAAATCAAGATCACAG 711
Query 688 AACAAACAAGTTCTTGACAGTTTTGCAGTAATCAAGAGTTCTCTTGATCCAAAG-AAGGA 746
||||||||| |||||||||||||||||||||||||||||||| | ||||| || |||||
Sbjct 712 AACAAACAAATTCTTGACAGTTTTGCAGTAATCAAGAGTTCTATCGATCC-GAGCAAGGA 770
Query 747 TTTCAGAGAATCAATGGTGGAGATGATAGCAGAGAGCAACATCAGAACCTCTAAAGACAT 806
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 771 TTTCAGAGAATCAATGGTGGAGATGATAGCAGAGAACAACATCAGAACCTCTAACGACAT 830
Query 807 GGAGGATCTTCTAGCATGTTACCTTACCTTGAATGCCAAGGAGTATCATAATCTTATCAT 866
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 831 GGAGGATCTTCTAGTATGTTACCTTACCTTGAATCCCAAGGAGTATCATGATCTCATTAT 890
Query 867 CAAGGTTTTCGTTCAAGTCTGGCTTGAAGTTATAAACT 904
|||||||||||||||||||||||||||||| |||||||
Sbjct 891 CAAGGTTTTCGTTCAAGTCTGGCTTGAAGTCATAAACT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5