BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470714
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06930.1 | Symbols: | unknown protein; Has 4478 Blast hits ... 676 0.0
> AT1G06930.1 | Symbols: | unknown protein; Has 4478 Blast hits
to 355 proteins in 82 species: Archae - 0; Bacteria - 29;
Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other
Eukaryotes - 3800 (source: NCBI BLink). | chr1:2128843-2129883
FORWARD LENGTH=1041
Length=1041
Score = 676 bits (366), Expect = 0.0
Identities = 510/573 (89%), Gaps = 35/573 (6%)
Strand=Plus/Plus
Query 253 AAAGTGTCCAATGCCTCAACTGGATCGTTCTAGGGTTTCCACGACCAAACTGATCCTCTC 312
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AAAGTGTCCAATGCCTCAGCTGGATCGTTCTAGGGTTTCCACGACCAAACTGATCCTCTC 370
Query 313 TGTGGTCGTCGACAGCGACTACTACGGTGGATCATCTGCCGCCGTTCCCTTCAAATGGGA 372
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 371 TGTGGCCGTCGAGGGCGACTACTACGGTGGATCATCAGCCGCCGTTCCCTTCAAATGGGA 430
Query 373 ATCTCAGCCCGGAACTCCAAGACGACT-TAGCAAACGATCCTCCTCTTCCGGCTTCGATT 431
||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct 431 ATCTCAGCCCGGAACTCCAAGACGACTCTC-CAAACGATCCTCCTCTTCCGGTTTCAATT 489
Query 432 CTGACTCTGATTTCAATTCTCCGGTTTCAGCTCCACTAACACCTCCTCCTTCTTACTTCT 491
|||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 490 CTGATTCTGATTTCAATTTTCCGGTTTCAGCACCACTAACACCTCCTCCTTCTTACTTCT 549
Query 492 ACGCTTATCCTTCCTCTACTAAAC-CTGTAAACCCTAAAA---CCAACACTCTCTTTGGT 547
|||||| ||| |||||||| |||| | |||| |||||||| |||||||||||||| ||
Sbjct 550 ACGCTTCTCCATCCTCTACAAAACAC-GTAAGCCCTAAAAAAACCAACACTCTCTTTAGT 608
Query 548 TCCTTGCTTCCCAAGAATCGTAGTGTTCCTTCGTCTCCAGCTTCTTCTTC---GTCATCC 604
||||||||| |||||||||||||||| || || ||||| ||||||||||| ||| |||
Sbjct 609 TCCTTGCTTTCCAAGAATCGTAGTGTGCCATCTTCTCCGGCTTCTTCTTCTTCGTCGTCC 668
Query 605 TCGTCTTCGGTTCCATCTTCTCCATTGAGGACATCTGATTTAAGCAGGAGGAACAGAAGA 664
|||||||| ||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 669 TCGTCTTCAGTTCCATCTTCTCCATTGAGGACATCTGATTTAAGCA--A----CAGAAGA 722
Query 665 AAAAGATCAATGTGGTTTGAATCTGCTTCGAGTTTAGACTACGGATCGAATCATTATAAT 724
| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 723 A---GATCAATGTGGTTTGAATCTGGTTCGAGTTTAGACTACGGATCGAAT-AGT----- 773
Query 725 AATGCTAAATCTTCTGGATGTTACGCTTCCATTGTCAAGGTGTTGCTCAGATCATGTTAA 784
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 ---GCTAAATCTTCTGGATGTTACGCTTCCCTTGTCAAGGTGTTGCTCAGATCATGTTAA 830
Query 785 CTTAAATGATTCTGCTTTTTATTCTTCTAATTT 817
| ||||||||| |||| ||||| || |||
Sbjct 831 ---A--TGATTCTGCCTTTT-TTCTTATA-TTT 856
Score = 337 bits (182), Expect = 1e-91
Identities = 209/221 (95%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 1 TATAATTGGATCAAATGATCTCGAACAGGATAATACTCTCAGTGGCTTCCAAGAAGCAGA 60
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 12 TATAATTGGATCAGATGATCTGGAACAGGATAATACTCTCAGTGGCTTCCAAGAAGCAGA 71
Query 61 GCCCAGAAGAAGCATCACACCTCGAGATTCAACAATATTTTATCAAATTGCCTCTTACTC 120
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 72 GCCCAGAAG---CATCACACCTCGAGATTCTACAATATTTTATCAAATTGCTTCTTACTC 128
Query 121 ATTCAAAACTATATAATAAAATAAGATCACAAACAATTCAGAAA-TTTTGAATCTGAATC 179
|||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 129 ATTCAAAACTATATAATAAAATAAGAACACAAACAATTCA-AAACTTTTGAATCTGAATC 187
Query 180 TAAATCTTCTTAATTCACCCAATAAAGTAAGaaaa-aaaaa 219
|||||||||||| |||||||||||||||||||||| |||||
Sbjct 188 TAAATCTTCTTAGTTCACCCAATAAAGTAAGAAAACAAAAA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5