BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470726
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07030.1 | Symbols: | Mitochondrial substrate carrier famil... 2167 0.0
AT2G30160.1 | Symbols: | Mitochondrial substrate carrier famil... 673 0.0
> AT1G07030.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr1:2158420-2160809 REVERSE LENGTH=1477
Length=1477
Score = 2167 bits (1173), Expect = 0.0
Identities = 1367/1458 (94%), Gaps = 23/1458 (2%)
Strand=Plus/Plus
Query 1 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAACCTTTGATGACAGCAAGGA-GA-- 57
|||||||||||||||||||||||||||||||||||| |||||| |||| |||||| ||
Sbjct 6 TCCACCTGAAATAAAAATTGTGGAAGAAAGATCAAATCTTTGACGACATCAAGGAGGAGG 65
Query 58 AGTTGGTAACCTAGAGATAAAAACAAAA-CTATGTTAGGAGATAATGTAGT-CA--ACCA 113
| ||||||| ||| |||||||||||||| ||||| || ||||||||||||| || ||||
Sbjct 66 ATTTGGTAAGCTACAGATAAAAACAAAAGCTATGATATGAGATAATGTAGTCCACCACCA 125
Query 114 CATCAAATTCCCCCATCACCGTCTCTCTTCGTCGGTGATTAACATTCCGA-TT--TG-C- 168
|| ||||||||||| ||||||||||||||||||||||||| ||||||||| || || |
Sbjct 126 CACCAAATTCCCCCTTCACCGTCTCTCTTCGTCGGTGATTCACATTCCGATTTGGTGTCT 185
Query 169 ----T-C-C--ACCCATTCCTCAAAAACCCTACTTTTACTCAAGATTTTGTCCCCGCCGC 220
| | | | | | |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 186 TTTTTACTCTTAACAAGTCCTCAAAAACCCTACTTTTACTCGAGATTTTGTCTCCGCCGC 245
Query 221 CGAGTGCCTAGTGCCTCCCGATCTACTCCCCAATCCCTAGATGGCTACGGAGGCTACAAC 280
||||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 246 CGAGTACCAAGTGCCTCCCGATCTACGCCCCAATCCCTAAATGGCTACGGAGGCTACAAC 305
Query 281 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CGTACCCAAATTCCAGGAACCTGATCTCCGGCAGGTTTCTCAGACACCGGATTTCAAACC 365
Query 341 GGAAATCGCTCATGACGGTCTTAAGTTCTGGCAATTCATGATTGCTGGTTCGATTGCTGG 400
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 GGAAATCGCTCACGATGGTCTTAAGTTCTGGCAATTTATGATTGCTGGTTCGATTGCTGG 425
Query 401 CTCCGTCGAACACATGGCGATGTTTCCTGTTGATACCGTGAAGACCCATATGCAAGCACT 460
||||||||||||||||||||||||||| || |||||| | ||||||||||||||||| ||
Sbjct 426 CTCCGTCGAACACATGGCGATGTTTCCCGTCGATACCATCAAGACCCATATGCAAGCGCT 485
Query 461 TCGACCATGTCCGTTAAAACCCGTCGGAATCCGGCAAGCTTTCCGTTCGATTATCCAAAA 520
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 486 TCGACCATGTCCCTTAAAACCCGTCGGAATCCGGGAAGCTTTCCGTTCGATTATCCAAAA 545
Query 521 GGAAGGACCTTCAGCTTTGTATCGAGGGATTTGGGCTATGGGTCTCGGAGCTGGACCTGC 580
|||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 546 GGAAGGACCTTCAGCTCTGTATCGCGGGATCTGGGCTATGGGTCTCGGCGCTGGACCTGC 605
Query 581 TCACGCCGTTTACTTCTCCTTTTACGAGGTATCGAAGAAGTATTTATCCGCCGGGAATCA 640
|||||||||||||||||| || || || ||||||||||||||||||||||||||| ||||
Sbjct 606 TCACGCCGTTTACTTCTCATTCTATGAAGTATCGAAGAAGTATTTATCCGCCGGGGATCA 665
Query 641 GAACAATTCCGTCGCGCATGCGGTCTCAGGTGTATTCGCTACTATATCAAGCGATGCTGT 700
|||||||||||||||||||||| | || || |||||||||||||||||||||||||||||
Sbjct 666 GAACAATTCCGTCGCGCATGCGATGTCCGGCGTATTCGCTACTATATCAAGCGATGCTGT 725
Query 701 TTTTACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 760
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TTTCACTCCCATGGATATGGTGAAGCAGAGGTTGCAGATGGGTGAAGGGACTTATAAAGG 785
Query 761 GGTTTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 820
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AGTCTGGGATTGTGTTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTC 845
Query 821 TTATAGGACGACGGTTCTGATGAACGCGCCTTTTACGGCTGTTCATTTTGCGACGTATGA 880
|||||||||||||||||||||||||||||| |||||||||||||| ||||| || || ||
Sbjct 846 TTATAGGACGACGGTTCTGATGAACGCGCCGTTTACGGCTGTTCACTTTGCCACTTACGA 905
Query 881 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGAAAGAGTTAGTGATGAGGAAGGTTG 940
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 906 GGCTGCTAAGAAGGGATTGATGGAGTTTTCGCCGGATAGAATTAGTGATGAGGAAGGTTG 965
Query 941 GTTGGTTCATGCCACTGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACGACGCC 1000
||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 966 GTTGGTTCACGCTACCGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACTACGCC 1025
Query 1001 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGCGACCGCTTCAC 1060
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1026 GCTTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGTGACCGCTTCAC 1085
Query 1061 TAGTGGTTCGATTAGTCATGTACTGAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1120
|||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1086 TAGTAGTTCTATTAGCCATGTACTTAGAACGATAGTGAAAAAAGATGGATACAGAGGACT 1145
Query 1121 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TCTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1205
Query 1181 CACTTATGAAGGGGTTAAATCTTTCTTTCAAGACTTCAATGGCGATTCAAGCACTGCCTG 1240
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1206 CACTTATGAAGGAGTTAAATCTTTCTTTCAAGACTTCAATGTCGATTCAAACACTGCCTG 1265
Query 1241 AAAAAA-GACAAATGG-TTAGGCTATT-CACACTCTTGAGGATCCTGCTTTTCTTATTTG 1297
|||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1266 AAAAAAAGACAAAAGGGTTAGGCTATTTCACACTCTTGAGGATCCTGCTTTTCTTATTTG 1325
Query 1298 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TTTGTAACATAGTTTTCTCAGGTTTTCTATGAAGTCATTTTTAGATTATATATTTTCCAG 1385
Query 1358 GTTTGTGTTGATGATGCTGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1417
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 GTTTGTGTTGATGATAATGTCGTCGAGAAATTTTGATTAGAGTTGTACAAAACTATGTTC 1445
Query 1418 CTTCCAAATTTCTAATAA 1435
||||||||||||||||||
Sbjct 1446 CTTCCAAATTTCTAATAA 1463
> AT2G30160.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:12877838-12879649 FORWARD LENGTH=1446
Length=1446
Score = 673 bits (364), Expect = 0.0
Identities = 735/913 (81%), Gaps = 29/913 (3%)
Strand=Plus/Plus
Query 359 TCTTAAGTTCTGGCAATTCATGATTGCTGGTTCGATTGCTGGCTCCGTCGAACACATGGC 418
|||||| ||||||||| | ||| | || ||||| || |||||||| ||||||||||||||
Sbjct 283 TCTTAAATTCTGGCAACTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGC 342
Query 419 GATGTTTCCTGTTGATACCGTGAAGACCCATATGCAAGCACTTCGACCATGTCCG-TTAA 477
|||||||| || ||||| || || |||||||||||||| ||||| |||||||| || |
Sbjct 343 TATGTTTCCAGTAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATT-A 401
Query 478 AACCCGTCGGAATCCGGCAAGCTTTCCGTTCGATTATCCAAAA-GGAAGGACCTTCAGCT 536
|||| |||||||||| |||||||||||||| ||||| ||||| || |||||||| |||
Sbjct 402 AACCAATCGGAATCCGTCAAGCTTTCCGTTCAATTAT-CAAAACCGATGGACCTTCTGCT 460
Query 537 TTGTATCGAGGGATTTGGGCTATGGGTCTCGGAGCTGGACCTGCTCACGCCGTTTACTTC 596
|| ||| |||| |||||||||||||| || || |||||||| |||||||| ||||| |||
Sbjct 461 TTATATAGAGGTATTTGGGCTATGGGACTTGGTGCTGGACCAGCTCACGCTGTTTATTTC 520
Query 597 TCCTTTTACGAGGTATCGAAGAAGTATTTATCCGCCGGGAATCAGAACAATTCCGTC-GC 655
|| || || || || || ||||||| |||||||| || || | || || || | | ||
Sbjct 521 TCATTCTATGAAGTCTCTAAGAAGTTTTTATCCGGTGGAAACCCTAATAACTCTG-CTGC 579
Query 656 GCATGCGGTCTCAGGTGTATTCGCTACTATATCAAGCGATGCTGTTTTTACTCCCATGGA 715
|| || | || ||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct 580 ACACGCTATTTCCGGTGTTTTCGCTACTATATCTAGTGATGCTGTGTTTACTCCAATGGA 639
Query 716 TATGGTGAAGCAGAGGTTGCAGATGGGTGAA-GGGACTTATAAAGGGGTTTGGGATTGTG 774
|||||| ||||| |||||||| || || ||| || ||||||||||| ||||||||||||
Sbjct 640 TATGGTTAAGCAAAGGTTGCAAATTGG-GAATGGAACTTATAAAGGAGTTTGGGATTGTA 698
Query 775 TTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTCTTATAGGACGACGG 834
| ||||| || ||||||||||||| ||||||| ||||| ||||| ||||| || || |
Sbjct 699 TCAAGAGAGTAACGCGTGAGGAAGGGTTTGGTGCTTTTTACGCTTCGTATAGAACTACTG 758
Query 835 T-TCTGATGAACGCGCCTTTTACGGCTGTTCATTTTGCGACGTATGAGGCTGCTAAGAAG 893
| | ||||||| || || ||||| ||||| ||||| | || |||||||| | |||| ||
Sbjct 759 TGT-TGATGAATGCTCCGTTTACCGCTGTGCATTTCACTACTTATGAGGCGGTTAAG-AG 816
Query 894 -GGATTGATGGAG-TTTTCGCC-G-GAAAG-AGTT-----AG-TGATGAGGAAGGTTGGT 942
|| |||| |||| | || ||| | | | | ||| || ||||||||||||||||
Sbjct 817 AGGTTTGAGGGAGATGTT-GCCTGAGCATGCTGTTGGAGCAGAGGATGAGGAAGGTTGGT 875
Query 943 TGGTTCATGCCACTGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACGACGCCGC 1002
|| || |||| |||||||||||||| |||||||| || || |||||||| || || ||||
Sbjct 876 TGATTTATGCTACTGCTGGAGCTGCGGCTGGTGGGTTAGCGGCTGCTGTAACTACTCCGC 935
Query 1003 TTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGCGACCGCTTCACTA 1062
|||||||||| |||||||||||||||||||||||||||||||| || ||||| |||| |
Sbjct 936 TTGATGTTGTTAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGA 995
Query 1063 GTGGTTCGATTAGTC-ATGTACTGAGAACGATAGTGAAAAAAGATGGATACAGAGGACTT 1121
| |||| || || | |||| | | || |||||||| ||||| || || |||||||||
Sbjct 996 GCAGTTCAATAAG-CGATGTGTTCCGTACAATAGTGAAGAAAGACGGTTATAGAGGACTT 1054
Query 1122 -CTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1180
||| | |||||||| || |||||||||||||||||||| ||||| || || || |||||
Sbjct 1055 GCTA-GAGGATGGCTACCAAGAATGCTCTTCCATGCTCCAGCAGCTGCGATTTGCTGGTC 1113
Query 1181 CACTTATGAAGGGGTTAAATCTTTCTTTCAAGA-CTTCAATGGCGATTCAAGCACTGCCT 1239
|||||||||| || ||||||||||||||||| || |||||| || ||| | | || |
Sbjct 1114 CACTTATGAAACAGTCAAATCTTTCTTTCAAGATCT-CAATGGTGAAGCAAACGCAGCTT 1172
Query 1240 GAAAAAAGACAAA 1252
||||| | |||||
Sbjct 1173 GAAAAGACACAAA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5