BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470729
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07070.1 | Symbols: | Ribosomal protein L35Ae family protei... 725 0.0
AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protei... 230 1e-59
AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protei... 230 1e-59
> AT1G07070.1 | Symbols: | Ribosomal protein L35Ae family protein
| chr1:2168564-2169851 FORWARD LENGTH=575
Length=575
Score = 725 bits (392), Expect = 0.0
Identities = 430/448 (96%), Gaps = 3/448 (1%)
Strand=Plus/Plus
Query 1 AAGGATACGCTTATTAGG-GTTTGTGAGCTTTCGTCTCCGTTTTTTGAAGGCAACGCTGC 59
|||||| ||||||||||| ||| |||| ||||||||||||||| ||||||||| ||||
Sbjct 1 AAGGATTCGCTTATTAGGTTTTTTTGAGTTTTCGTCTCCGTTTTCTGAAGGCAA--CTGC 58
Query 60 TAATTTCTTCCACCGGACGATTCGACAAAAATGGTGAAAGGACGCCAAGGAGAACGTGTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TAATTTCTTCCACCGGACGATTCGACAAAAATGGTGAAAGGACGCCAAGGAGAACGTGTC 118
Query 120 AGACTCTATGTCAGGGGAACCATACTTGGCTACAAAAGGTCGAAGTCAAACCAGTATCCG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGACTCTATGTCAGGGGAACCATACTTGGCTACAAAAGGTCGAAGTCAAACCAGTATCCC 178
Query 180 AATACGTCCCTAGTCCAAGTCGAAGGAGTTAACACCACTGAGGAAGTGTCATGGTACAAA 239
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 AACACGTCACTAGTCCAAGTCGAGGGAGTTAACACCACTGAGGAAGTGTCATGGTACAAA 238
Query 240 GGTAAACGAATGGCTTACATCTACAAAGCCAAGACCAAGAAGAACGGTAGTCACTACCGA 299
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGTAAAAGGATGGCTTACATCTACAAAGCCAAGACCAAGAAGAACGGTAGTCACTACCGA 298
Query 300 TGCATTTGGGGCAAAGTCACTAGGCCTCACGGTAACAGTGGCGTTGTTCGAGCCAAATTC 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGCATTTGGGGCAAAGTCACAAGGCCTCACGGTAACAGTGGCGTTGTTCGAGCCAAATTC 358
Query 360 ACATCAAACTTGCCTCCTAAATCAATGGGATCTCGAGTTCGAGTGTTCATGTATCCGAGT 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 ACATCAAACTTGCCTCCTAAATCAATGGGATCTCGAGTTCGAGTGTTTATGTATCCGAGT 418
Query 420 AACATTTAAAGCTCTGTGTACTCGTCAT 447
|||||||||||| ||||||||||||||
Sbjct 419 AACATTTAAAGCAGTGTGTACTCGTCAT 446
> AT3G55750.1 | Symbols: | Ribosomal protein L35Ae family protein
| chr3:20698553-20700067 FORWARD LENGTH=656
Length=656
Score = 230 bits (124), Expect = 1e-59
Identities = 269/338 (80%), Gaps = 14/338 (4%)
Strand=Plus/Plus
Query 94 TGAAAGGACGCCAAGGAGA-ACGTGTCAGACTCTATG-TCAGGGGAACCA-TACTTGGCT 150
|||| ||||| |||||||| | | || ||| | |||| || | |||| || | || || |
Sbjct 90 TGAAGGGACGTCAAGGAGAGA-GAGTTAGATTGTATGTTC-GTGGAA-CAGTCCTCGGTT 146
Query 151 ACAAAAGGTCGAAGTCAAACCAGTATCCGAATACGTCCCTAGTCCAAG-TCGAAGGAGTT 209
|||| ||||| ||||| ||||| || || || || || || |||| || | ||||| ||
Sbjct 147 ACAAGAGGTCCAAGTCGAACCAATACCCTAACACTTCTCTCGTCC-AGATTGAAGGTGTG 205
Query 210 AACAC-CACTGAGGAAGTGTCA-TGGTACAAAGGTAAACGAATGGCTTACATCTACAAAG 267
||||| || ||||| || | | |||||||| ||||| || |||||||||||||||| |
Sbjct 206 AACACTCA-AGAGGAGGT-TAATTGGTACAAGGGTAAGCGTTTGGCTTACATCTACAAGG 263
Query 268 CCAAGACCAAGAAGAACGGTAGTCACTACCGATGCATTTGGGGCAAAGTCACTAGGCCTC 327
| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 264 CAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCACTAGGCCTC 323
Query 328 ACGGTAACAGTGGCGTTGTTCGAGCCAAATTCACATCAAACTTGCCTCCTAAATCAATGG 387
| ||||||||||| ||||| || | || ||||| |||||| | || || || |||||||
Sbjct 324 ATGGTAACAGTGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCAAGTCAATGG 383
Query 388 GATCTCGAGTTC-GAGTGTTCATGTATCCGAGTAACAT 424
|| || |||| | |||| |||||||| || || |||||
Sbjct 384 GAGCTAGAGT-CAGAGTCTTCATGTACCCTAGCAACAT 420
> AT1G41880.1 | Symbols: | Ribosomal protein L35Ae family protein
| chr1:15651027-15652542 REVERSE LENGTH=729
Length=729
Score = 230 bits (124), Expect = 1e-59
Identities = 271/340 (80%), Gaps = 18/340 (5%)
Strand=Plus/Plus
Query 94 TGAAAGGACGCCAAGGAGA-ACGTGTCAGACTCTATG-TCAGGGGAACCA-TACTTGGCT 150
|||| ||||| |||||||| | | || ||| | |||| || | |||| || | || ||||
Sbjct 117 TGAAGGGACGTCAAGGAGAGA-GAGTTAGATTGTATGTTC-GTGGAA-CAGTCCTCGGCT 173
Query 151 ACAAAAGGTCGAAGTCAAACCAGTATCCGAATACGTCCCT-AGTCCAAG-TCGAAGGAGT 208
|||| ||||| ||||| ||||| ||||| || || || || | ||| || | ||||| ||
Sbjct 174 ACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCA-TCC-AGATTGAAGGTGT 231
Query 209 TAACAC-CACTGAGGAAGTGTC-A-TGGTACAAAGGTAAACGAATGGCTTACATCTACAA 265
||||| || |||| || ||| | |||||||| ||||| || ||||||||||||||||
Sbjct 232 GAACACTCA-AGAGG-AG-GTCAATTGGTACAAGGGTAAGCGTTTGGCTTACATCTACAA 288
Query 266 AGCCAAGACCAAGAAGAACGGTAGTCACTACCGATGCATTTGGGGCAAAGTCACTAGGCC 325
|| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 289 GGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCACTAGGCC 348
Query 326 TCACGGTAACAGTGGCGTTGTTCGAGCCAAATTCACATCAAACTTGCCTCCTAAATCAAT 385
||| |||||||| || ||||| || | || ||||| |||||| | || || || |||||
Sbjct 349 TCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCAAGTCAAT 408
Query 386 GGGATCTCGAGTTC-GAGTGTTCATGTATCCGAGTAACAT 424
|||| || |||| | |||| |||||||| || || |||||
Sbjct 409 GGGAGCTAGAGT-CAGAGTCTTCATGTACCCTAGCAACAT 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5