BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470730
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07080.1 | Symbols: | Thioredoxin superfamily protein | chr... 1378 0.0
> AT1G07080.1 | Symbols: | Thioredoxin superfamily protein | chr1:2169982-2172194
FORWARD LENGTH=1218
Length=1218
Score = 1378 bits (746), Expect = 0.0
Identities = 884/949 (93%), Gaps = 15/949 (2%)
Strand=Plus/Plus
Query 1 TTTGAAGAAGAAGAAGGCGACGACAC-AACACCTTGCATTTGTATCCATGGCGTCGATAA 59
|||||||||||||||||||||||||| || |||||||||||| |||||||||||||||
Sbjct 41 TTTGAAGAAGAAGAAGGCGACGACACAAAAACCTTGCATTTGCATCCATGGCGTCGATGC 100
Query 60 CGAGCAAACTTTTTCTAGTCCTAGTCTGCTACGTTTTTCTTTTCCCCTTTGCTTCGTTCT 119
||||||||||| ||| ||||||||||||||||||||||||||||||| | || |
Sbjct 101 CGAGCAAACTTCTTCCAGTCCTAGTCTGCTACGTTTTTCTTTTCCCC--T--TT-G---- 151
Query 120 CATCGTCAGCTGATTTTTCTGGGGTATCTCTTCCATCCTCGTCGCCGAAAGTCTCGGTGG 179
|||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 152 CATCATCATCTGATTATTCTGGGGTATCTCTTCCATCTTCGTCGCCTAAAGTCTCGGTGG 211
Query 180 GCCTGTACTACGAGTCTCTCTGTCCGTACTGCTCCTCCTTCATAGTTAACCACCTCACGA 239
||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||
Sbjct 212 GCCTGTACTACGAGTCTCTCTGTCCCTACTGCTCTTCCTTCATTGTTAACCACCTCGCGA 271
Query 240 AACTCTTTGAAGACGATCTAATATCGATCGTCGATCTCCATCTGTCTCCGTGGGGCAATA 299
| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 272 AGCTCTTCGAAGACGATCTCATATCAATCGTCGATCTCCATCTCTCTCCGTGGGGCAATA 331
Query 300 CCAAGCTCCGTCCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CCAAGCTCCGTTCCGATAACGTCACTGCCGTTTGCCAGCATGGGGCATTTGAATGCTTCT 391
Query 360 TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTGAGCGATCATTTCCCGT 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 392 TGGATACCGTAGAAGCTTGTGCAATTGATGCTTGGCCTAAAGTAAGCGATCATTTCCCGT 451
Query 420 TCATATACTGTGTCGAGAAGTTGGTGACTGAACACAAGTACGATAAGTGGGAGACGTGTT 479
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 452 TCATATACTGTGTCGAGAAGTTGGTGACTGAACATAAGTATGACAAGTGGGAGACGTGTT 511
Query 480 ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCCGATTGTCTCAGCACTGGACATGGGA 539
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 512 ATGAGAAGCTCAATCTCAACTCGAAACCTGTTGCAGATTGTCTCAGCAGTGGACATGGGA 571
Query 540 ATGAGCTTGCTTTGCACTATGCTGCAGAAACAAATGCTCTTCAGCCTCCTCATCA-GTAC 598
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 572 ATGAGCTTGCTTTGCACTATGCTGCAGAAACGAATGCGCTTCAGCCTCCTCA-CAAGTAT 630
Query 599 GTGCCCTGGGTAGTCGTAGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC 658
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GTGCCCTGGGTAGTCGTGGATGGTCAGCCACTTTATGAGGACTATGAAAACTTCATAAGC 690
Query 659 TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTGCCAAATATGCAACC 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 691 TACATCTGCAAGGCTTACAAAGGTAATAAAGTACCTGGCGCATGTACCAAATATGCAACC 750
Query 719 GGCGACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGTAAGCC-GGAAAGGAGT 777
||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 751 GGCAACTTCATTCGTAGTGTCAAATTGAAACGCTCCCCTCTGGTGT-CCTGGAAAGGCGT 809
Query 778 CAATAAGATGTGGGATGTGTTGGAACGTATCAAAACCTCTTTATCGTCATACATCGAAAT 837
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 810 GAATAAGATGTGGGATGTGTTGGAACGTATCACAACCTCTTTATCGTCATACATCGACAT 869
Query 838 CACCCGCCTGCTATGAACACTTCCTGTATCTTTTACCTATGTAACAAAC-ACCCTAAAAA 896
|||| ||||||||||||||||||||||||||||| || ||||||||||| |||| |||||
Sbjct 870 CACCGGCCTGCTATGAACACTTCCTGTATCTTTTTCCCATGTAACAAACCACCCCAAAAA 929
Query 897 GCTATCTAGATTCTGAAATGTGATGAATATGTATAATCTATATGTATCA 945
|||||||||||||||| || | |||||| ||| |||||| ||||| |||
Sbjct 930 GCTATCTAGATTCTGATATTTAATGAATGTGTGTAATCTTTATGTTTCA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5