BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470733
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1945 0.0
AT1G07119.1 | Symbols: | other RNA | chr1:2184347-2186539 FORW... 368 7e-101
> AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: inflorescence meristem,
petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to
260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa
- 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes
- 75 (source: NCBI BLink). | chr1:2184759-2186580 REVERSE
LENGTH=1294
Length=1294
Score = 1945 bits (1053), Expect = 0.0
Identities = 1230/1313 (94%), Gaps = 22/1313 (2%)
Strand=Plus/Plus
Query 1 ATGTTACCTAATGGAGAAGATGATTCGGATCTCATGCGTCTGGTGAAGGAGCTTCAAGCC 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTTACCTAATGGAGAAGATGATTCAGATCTCCTGCGTCTGGTGAAGGAGCTTCAAGCC 60
Query 61 TCTCTAGTGAGGAACGATAAGTTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCTAGTGAGGAACGATAAGCTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120
Query 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAAGCACATGACAATGAGAGGAAATCAATGTTA 180
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAATCACATGAAAATGAGAGGAAATCAATGCTA 180
Query 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAATCTGAAAGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAACCTGAAAGCG 240
Query 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGATAAGGAATCCAAACCCCAAGCCA 300
|||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||
Sbjct 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCCAAATCCCAAGCCA 300
Query 301 ATGGTCCAAGAACAGCCTACAGCGATAAAGCCGCCGCCACCTCCACCACTTCCATCAAAG 360
| | |||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 301 ACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACCACTTCCATCAAAG 360
Query 361 ACAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCTGAAGTTGTAGAGTTTTATCGTGCC 420
| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 AGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGAGTTTTATCGTGCC 420
Query 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAAAATGGAGTTTTGTCACCT 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGGAGTTTTGTCGCCT 480
Query 481 GCATTCAGCAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCATTCAACAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540
Query 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAGGTGGAGGGT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAAGTGGAAGCT 600
Query 601 GCAACATTTACAGATATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAACATTTACAGACATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660
Query 661 TCTTCCTTGGTTGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTCCTTGGTAGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720
Query 721 GCAGATT-ACCTAAGAGAGGCTGCTTGCAATTACAAAAGGCTAAAGAACCTTG-AAATTG 778
| ||||| || |||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 721 GTAGATTCAC-TAAGAGAGGCTGCTTGCAATTACAAAAGGCCAAAGAACCTTGGAAAT-G 778
Query 779 AGATTTTGTCATTCAAGGACAATCCAAAGGAATCTCTGACGCAAGCCTTGCAAAGGATTC 838
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 779 AGATTTTGTCATTCAAGGACAATCCAAAAGATTCTCTGACGCAGGCCTTGCAAAGGATTC 838
Query 839 AATCGCTGCAAGACAGGTTAGAGGAAAATGTTAACAACACAGAGAAGATGAGAGACAGTA 898
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 AATCGTTGCAAGACAGGTTAGAGGAAAGTGTTAACAACACAGAGAAGATGAGAGACAGTA 898
Query 899 CAGGGAAGAGATACAAGGACTTTCAGATACCGTGGGAGTGGATGCTCGACACAGGACTGA 958
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 899 CAGGGAAAAGATACAAGGATTTTCAGATACCTTGGGAGTGGATGCTCGACACAGGACTGA 958
Query 959 TTGGACAGCTAAAATACAGGTCGCTGAGGCTAGCTCAGGAGTACATGAAGCGAATAAGC- 1017
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 959 TTGGACAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAATA-GCG 1017
Query 1018 AACGAGCTGGAATCAAATGGAGGCGCTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077
|| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1018 AAGGAGCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077
Query 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGACGGAGAAACATTAGGCATATTT 1137
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGATGGAGAAACATTAAGCATATTT 1137
Query 1138 CACGAGCTAAAGAATATCAGTACAAGTGAAACCAGATGATAAGGATGTAATTGTTGACAT 1197
|||||||||||||| |||| |||| ||||||||||| ||||||||||||| |||| |
Sbjct 1138 CACGAGCTAAAGAAGATCACTACAGGTGAAACCAGAGGATAAGGATGTAACTGTT----T 1193
Query 1198 CTTTAAGTATCAAAGACTTGTGAAATTATGACGCAGTAGACATGTAAGAAACTGGAGGAC 1257
| || |||| |||||||||||||||||||||||| | | || | || ||||||
Sbjct 1194 G---A-GTGTCAACGACTTGTGAAATTATGACGCAGTA-A---G-AA-A--CTAGAGGAC 1241
Query 1258 TAAATTATTGTACTATTGAAGCCTTGTTTGCTTTAGCAGATATTTTATTGTCT 1310
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1242 TAAATTATTGTACTATTGAAGCCTTGGTTGCTTTAGCAAATATTTTAATGTCT 1294
> AT1G07119.1 | Symbols: | other RNA | chr1:2184347-2186539 FORWARD
LENGTH=656
Length=656
Score = 368 bits (199), Expect = 7e-101
Identities = 235/253 (93%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 228 TAATCTGAAAGCGCCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGATAAGGAATCC 287
||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 620 TAAGCTGAAAGCGCCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCC 561
Query 288 AAACCCCAAGCCAATGGTCCAAGAACAGCCTACAGCGATAAAGCCGCCGCCACCTCCACC 347
||| |||||||||| | |||||| ||| ||||||| | ||||||||| |||||||||||
Sbjct 560 AAATCCCAAGCCAACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACC 501
Query 348 ACTTCCATCAAAGACAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCTGAAGTTGTAGA 407
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 500 ACTTCCATCAAAGAGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGA 441
Query 408 GTTTTATCGTGCCCTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAAAATGG 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 440 GTTTTATCGTGCCCTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGG 381
Query 468 AGTTTTGTCACCT 480
||||||||| |||
Sbjct 380 AGTTTTGTCGCCT 368
Score = 176 bits (95), Expect = 5e-43
Identities = 112/120 (93%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 964 CAGCTAAAATACAGGTCGCTGAGGCTAGCTCAGGAGTACATGAAGCGAATAAGC-AACGA 1022
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 362 CAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAAT-AGCGAAGGA 304
Query 1023 GCTGGAATCAAATGGAGGCGCTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGATTTGC 1082
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 303 GCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGATTTGC 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5