BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470733 Length=1310 Score E Sequences producing significant alignments: (Bits) Value AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1945 0.0 AT1G07119.1 | Symbols: | other RNA | chr1:2184347-2186539 FORW... 368 7e-101 > AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:2184759-2186580 REVERSE LENGTH=1294 Length=1294 Score = 1945 bits (1053), Expect = 0.0 Identities = 1230/1313 (94%), Gaps = 22/1313 (2%) Strand=Plus/Plus Query 1 ATGTTACCTAATGGAGAAGATGATTCGGATCTCATGCGTCTGGTGAAGGAGCTTCAAGCC 60 |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 1 ATGTTACCTAATGGAGAAGATGATTCAGATCTCCTGCGTCTGGTGAAGGAGCTTCAAGCC 60 Query 61 TCTCTAGTGAGGAACGATAAGTTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120 | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 TATCTAGTGAGGAACGATAAGCTGGAGAAGGAAAATCATGAGCTGCGTCAAGAAGTTGCC 120 Query 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAAGCACATGACAATGAGAGGAAATCAATGTTA 180 |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || Sbjct 121 CGTCTAAGAGCACAAGTAAGCAATCTTAAATCACATGAAAATGAGAGGAAATCAATGCTA 180 Query 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAATCTGAAAGCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 TGGAAGAAGTTGCAGAGCTCATATGATGGCAGCAACACAGACGGATCTAACCTGAAAGCG 240 Query 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGATAAGGAATCCAAACCCCAAGCCA 300 |||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||| Sbjct 241 CCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCCAAATCCCAAGCCA 300 Query 301 ATGGTCCAAGAACAGCCTACAGCGATAAAGCCGCCGCCACCTCCACCACTTCCATCAAAG 360 | | |||||| ||| ||||||| | ||||||||| |||||||||||||||||||||||| Sbjct 301 ACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACCACTTCCATCAAAG 360 Query 361 ACAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCTGAAGTTGTAGAGTTTTATCGTGCC 420 | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 361 AGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGAGTTTTATCGTGCC 420 Query 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAAAATGGAGTTTTGTCACCT 480 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 421 CTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGGAGTTTTGTCGCCT 480 Query 481 GCATTCAGCAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCATTCAACAGAAACATGATTGGTGAAATCGAGAATCGCTCCAAATATCTTTCAGATATT 540 Query 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAGGTGGAGGGT 600 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | Sbjct 541 AAATCTGACACTGACAGACACAGAGATCATATCCATATCTTGATTAGTAAAGTGGAAGCT 600 Query 601 GCAACATTTACAGATATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCAACATTTACAGACATATCAGAAGTGGAGACATTTGTGAAATGGATAGACGAAGAACTA 660 Query 661 TCTTCCTTGGTTGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCTTCCTTGGTAGATGAAAGGGCAGTCCTAAAGCATTTCCCTAAATGGCCAGAACGCAAA 720 Query 721 GCAGATT-ACCTAAGAGAGGCTGCTTGCAATTACAAAAGGCTAAAGAACCTTG-AAATTG 778 | ||||| || |||||||||||||||||||||||||||||| ||||||||||| |||| | Sbjct 721 GTAGATTCAC-TAAGAGAGGCTGCTTGCAATTACAAAAGGCCAAAGAACCTTGGAAAT-G 778 Query 779 AGATTTTGTCATTCAAGGACAATCCAAAGGAATCTCTGACGCAAGCCTTGCAAAGGATTC 838 |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| Sbjct 779 AGATTTTGTCATTCAAGGACAATCCAAAAGATTCTCTGACGCAGGCCTTGCAAAGGATTC 838 Query 839 AATCGCTGCAAGACAGGTTAGAGGAAAATGTTAACAACACAGAGAAGATGAGAGACAGTA 898 ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 839 AATCGTTGCAAGACAGGTTAGAGGAAAGTGTTAACAACACAGAGAAGATGAGAGACAGTA 898 Query 899 CAGGGAAGAGATACAAGGACTTTCAGATACCGTGGGAGTGGATGCTCGACACAGGACTGA 958 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 899 CAGGGAAAAGATACAAGGATTTTCAGATACCTTGGGAGTGGATGCTCGACACAGGACTGA 958 Query 959 TTGGACAGCTAAAATACAGGTCGCTGAGGCTAGCTCAGGAGTACATGAAGCGAATAAGC- 1017 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| || Sbjct 959 TTGGACAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAATA-GCG 1017 Query 1018 AACGAGCTGGAATCAAATGGAGGCGCTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077 || |||||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 1018 AAGGAGCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGA 1077 Query 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGACGGAGAAACATTAGGCATATTT 1137 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1078 TTTGCCTACACAATACACCAGTTTGCTGGCGGTTTTGATGGAGAAACATTAAGCATATTT 1137 Query 1138 CACGAGCTAAAGAATATCAGTACAAGTGAAACCAGATGATAAGGATGTAATTGTTGACAT 1197 |||||||||||||| |||| |||| ||||||||||| ||||||||||||| |||| | Sbjct 1138 CACGAGCTAAAGAAGATCACTACAGGTGAAACCAGAGGATAAGGATGTAACTGTT----T 1193 Query 1198 CTTTAAGTATCAAAGACTTGTGAAATTATGACGCAGTAGACATGTAAGAAACTGGAGGAC 1257 | || |||| |||||||||||||||||||||||| | | || | || |||||| Sbjct 1194 G---A-GTGTCAACGACTTGTGAAATTATGACGCAGTA-A---G-AA-A--CTAGAGGAC 1241 Query 1258 TAAATTATTGTACTATTGAAGCCTTGTTTGCTTTAGCAGATATTTTATTGTCT 1310 |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 1242 TAAATTATTGTACTATTGAAGCCTTGGTTGCTTTAGCAAATATTTTAATGTCT 1294 > AT1G07119.1 | Symbols: | other RNA | chr1:2184347-2186539 FORWARD LENGTH=656 Length=656 Score = 368 bits (199), Expect = 7e-101 Identities = 235/253 (93%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 228 TAATCTGAAAGCGCCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGATAAGGAATCC 287 ||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||| Sbjct 620 TAAGCTGAAAGCGCCAGAGAGTGTCAAATCCAACACAAAGGGTCAAGAGGTCAGAAATCC 561 Query 288 AAACCCCAAGCCAATGGTCCAAGAACAGCCTACAGCGATAAAGCCGCCGCCACCTCCACC 347 ||| |||||||||| | |||||| ||| ||||||| | ||||||||| ||||||||||| Sbjct 560 AAATCCCAAGCCAACGATCCAAGGTCAGTCTACAGCAACAAAGCCGCCACCACCTCCACC 501 Query 348 ACTTCCATCAAAGACAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCTGAAGTTGTAGA 407 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 500 ACTTCCATCAAAGAGAACACTTGGAAAAAGATCTGTGCGGCGTGCTCCAGAAGTCGTAGA 441 Query 408 GTTTTATCGTGCCCTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAAAATGG 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 440 GTTTTATCGTGCCCTGACGAAGAGAGAGTCTCATATGGGGAACAAGATCAATCAGAATGG 381 Query 468 AGTTTTGTCACCT 480 ||||||||| ||| Sbjct 380 AGTTTTGTCGCCT 368 Score = 176 bits (95), Expect = 5e-43 Identities = 112/120 (93%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 964 CAGCTAAAATACAGGTCGCTGAGGCTAGCTCAGGAGTACATGAAGCGAATAAGC-AACGA 1022 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 362 CAGCTAAAATACAGCTCGCTGAGGCTAGCTCAGGAGTATATGAAGCGAAT-AGCGAAGGA 304 Query 1023 GCTGGAATCAAATGGAGGCGCTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGATTTGC 1082 |||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| Sbjct 303 GCTGGAATCAAATGGAAGTGGTAAAGAAGGAAATCTTATGCTTCAAGGGGTTCGATTTGC 244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64457499780 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5