BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470734
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07135.1 | Symbols: | glycine-rich protein | chr1:2189928-2... 680 0.0
> AT1G07135.1 | Symbols: | glycine-rich protein | chr1:2189928-2190659
REVERSE LENGTH=732
Length=732
Score = 680 bits (368), Expect = 0.0
Identities = 507/567 (89%), Gaps = 37/567 (7%)
Strand=Plus/Plus
Query 1 AAACAAAAGAAAAGATAAAGAAAATGGGTTTGAGAACAACATGGTTGGTTTTGTACATTC 60
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 13 AAACAAGAGAAAAGATAAAGAAAATGGGTTTGAGAAGAACATGGTTGGTTTTGTACATTC 72
Query 61 TCTTCATCTTTCATCTTCAGCACAATCTTACTTCCGTGAGCTCACGACCTTCCTCAGTAG 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 73 TCTTCATCTTTCATCTTCAGCACAATCTTCCTTCCGTGAGCTCACGACCTTCCTCAGTCG 132
Query 121 ATACAAACCACGAGGCTCTCCCTTTTAGTGTTTCAAAGCCAGACGTTGTTGT-TTTCGAA 179
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 133 ATACAAACCACGAGACTCTCCCTTTTAGTGTTTCAAAGCCAGACGTTGTTGTGTTT-GAA 191
Query 180 GGAAAGGCTCGGGAATTAGCTGTCGTTATCAAAA--G-AGGAGG---AGG---TGGAGGA 230
|||||||||||||||||||||||||||||||||| | |||||| ||| |||||||
Sbjct 192 GGAAAGGCTCGGGAATTAGCTGTCGTTATCAAAAAAGGAGGAGGTGGAGGAGGTGGAGGA 251
Query 231 CGCGGAGGCGGTGGAGCACGAAGCGGCGGTAGCAGCAGGAGAGGAGGAGGTGGCAGCAGT 290
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 252 CGCGGAGGCGGTGGAGCACGAAGCGGCGGTAGGAGCAGGGGAGGAGGAGGTGGCAGCAGT 311
Query 291 AGCAGCCGCAGCCGTGACTGGCAACGTGGTGGAGGAGTGATTCCGATTCATACGGGTGGT 350
|| |||||||||||||||||| |||| || ||||| ||| ||||||||||||||||||||
Sbjct 312 AGTAGCCGCAGCCGTGACTGGAAACGCGGCGGAGGGGTGGTTCCGATTCATACGGGTGGT 371
Query 351 GG-A-T--C-G---G----------C---AGGATCACATAGATCAAGCGGCAGCAGGAAT 389
|| | | | | | | |||||||||||||||||||||||||| ||||
Sbjct 372 GGTAATGGCAGTCTGGGTGGTGGATCGGCAGGATCACATAGATCAAGCGGCAGCATGAAT 431
Query 390 CTTCGAGGAACAGTGTGTGCGTTCGGTTGGTTGGCTTTATCGGTTTTAGCTGGTTTAGTC 449
|||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 432 CTTCGAGGAACAATGTGTGCGGTCTGTTGGTTGGCTTTATCGGTTTTAGCCGGTTTAGTC 491
Query 450 TTGGTTCAGTAGGGTTCAGAGTAATCGTTGGCCATTTATTTTATTTTTGGTTTTATAACG 509
||||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||
Sbjct 492 TTGGTTCAGTAGGGTTCAGAGTAATTATTGGCCATTTATTT-ATT---GGTTTTGTAACG 547
Query 510 GTTATGTTTATGGTCCGGTCTGTATAT 536
|||||||| |||||||||||| ||||
Sbjct 548 TTTATGTTTGTGGTCCGGTCTG-ATAT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5