BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470736
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07160.1 | Symbols: | Protein phosphatase 2C family protein... 1766 0.0
> AT1G07160.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:2197908-2199748 REVERSE LENGTH=1460
Length=1460
Score = 1766 bits (956), Expect = 0.0
Identities = 1162/1259 (92%), Gaps = 24/1259 (2%)
Strand=Plus/Plus
Query 1 AAAAAGTAAACTTTTAAGTTTTATACGAAACGATGTCGTTTTCAGTTGCCGTTTGCAACT 60
|||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 39 AAAAAGGAAACTTTTAAGTTTTCTACGAAACGATGTCGTCTTCAGTTGCCGTTTGCAACT 98
Query 61 CGCCGGTGTTCTCTCCGTCCTCGTCACTTTTCTGCAACAAACCGTTGATCATTTCTCCTG 120
| ||||||||||||||||| ||||| |||||||||||||||||||||| || |||||| |
Sbjct 99 CACCGGTGTTCTCTCCGTCTTCGTCTCTTTTCTGCAACAAACCGTTGAACACTTCTCCGG 158
Query 121 CGCATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTCCTTCTA 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 159 CACATGAAACCCTAACCCTGTCTCTTTCCCATCTCAATCCTCCCGTTTCTTCTACTTCTC 218
Query 181 CTTCCTCTGCTGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCCGAAACCACAGGCTA 240
||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 219 CTT-C-C-GCCGCGTCTCCCACATCTCCGTTCTGCCTCCGTCTCCTGAAACCGCCGGCTA 275
Query 241 AACAAGGGTTTGGATCCGACCCTGGTCCCGGAGGCGTTCTTAAGAGGAAACGACCGATGA 300
||| |||||||||||| ||| ||||||| ||| || |||| |||||||||||||||| ||
Sbjct 276 AACTAGGGTTTGGATCGGACTCTGGTCCGGGAAGCATTCTGAAGAGGAAACGACCGACGA 335
Query 301 GGCTTGATATACCGGTGGCTCCGGTTGGCATTGCAGCTCCGATATCGGAAACGGCGGTGA 360
||||||||||||||||||||||||||| ||||||||||| ||| | | ||
Sbjct 336 CGCTTGATATACCGGTGGCTCCGGTTGGTATTGCAGCTCC--TAT-----A--TC---GA 383
Query 361 ATGCACAGACGCCGAGGGAGGAGAGCAGAG-AGGTGGAGAGGGAAGGTGATGGTTACTCG 419
||||| | ||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 384 ATGCAGATACGCCGAGGGAGGAGAGTAGAGCA-GTGGAGAGGGAAGGTGATGGTTACTCT 442
Query 420 GTTTATTGCAAGAGAGGTAAAAGAGCAGCTATGGAGGATCGTTTCTCTGCCATCACAAAT 479
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 443 GTTTATTGCAAGAGAGGTAAAAGAGAAGCTATGGAGGATCGTTTCTCTGCCATCACTAAT 502
Query 480 ATTCAAGGAGAACCCAAAAAGGCAATATTCGGAGTCTATGATGGTCATGGAGGACCAATA 539
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
Sbjct 503 CTTCAAGGAGATCCCAAACAGGCAATATTCGGAGTCTATGATGGTCACGGAGGACCAACA 562
Query 540 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAATAACATTCTAGGAGAGATAGTTGGTGGG 599
||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 563 GCGGCTGAGTTTGCGGCTAAGAACTTGTGTAGTAACATTCTTGGCGAGATAGTTGGTGGG 622
Query 600 GGGAACGAGTCAAAGTTTGAAGAAGCAGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 659
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 AGGAACGAGTCAAAGATTGAAGAAGCTGTAAAACGTGGTTATCTAGCGACTGATTCTGAG 682
Query 660 TTTCTCAAGGAAAAAGACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TTTCTCAAGGAAAAAAACGTTAAGGGCGGCTCGTGCTGTGTCACGGCTCTGATCAGCGAC 742
Query 720 GGGAATCTTGTGGTTGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATAC 779
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 743 GGAAATCTTGTGGTGGCCAATGCTGGTGACTGCCGTGCTGTTTTGAGCGTTGGAGGATTC 802
Query 780 GCGGAAGCCCTGACTTCTGACCACCGACCTTCGAGGGACGATGAACGAAACAGAATTGAG 839
||||| ||| |||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 803 GCGGAGGCCTTGACTTCTGACCACCGCCCTTCCAGAGATGATGAACGAAACAGAATTGAG 862
Query 840 AGCTCGGGCGGTTATGTCGATACATTCAATAGTGTTTGGAGAATCCAAGGATCTTTAGCG 899
||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 863 AGCTCGGGCGGTTATGTGGATACATTCAATAGTGTTTGGAGAATTCAAGGATCATTAGCG 922
Query 900 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGACA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 923 GTATCTAGAGGAATAGGAGATGCTCATCTCAAACAATGGATAATATCTGAACCAGAGATA 982
Query 960 AAGATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGACGGTCTATGG 1019
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 983 AATATTCTCCGAATCAATCCCCAACACGAGTTCTTGATCTTAGCATCAGATGGTCTATGG 1042
Query 1020 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCATAGGAATCGAT 1079
||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 1043 GACAAGGTTAGTAATCAGGAGGCAGTAGACATAGCTCGACCATTTTGCAAAGGGACCGAT 1102
Query 1080 CAAAAACGGAAGCCATTGTTAGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1139
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CAGAAACGGAAGCCATTGCTGGCTTGCAAGAAGCTCGTTGACCTCTCTGTATCACGAGGC 1162
Query 1140 TCCTTGGACGATATTAGTGTGATGTTGGTTCCGTTGTGCCGCTTCTTCTGACCATAGGAG 1199
||||||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||
Sbjct 1163 TCCTTGGACGATATTAGTGTGATGTTGATTCAGTTGTGCCACCTCTTCTGACCATAGGAG 1222
Query 1200 AAATGTACAGACAAGATAACAATCTAGACGTTAGAGTTTGAAGTCATTCTTAATT-CTT 1257
||||||| ||||| || | || | | |||||||||| ||||||||||||||||| |||
Sbjct 1223 AAATGTAGAGACA-GA-AT-AA-C-A-ACGTTAGAGTCTGAAGTCATTCTTAATTTCTT 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5