BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470742
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07240.1 | Symbols: UGT71C5 | UDP-glucosyl transferase 71C5 ... 2119 0.0
> AT1G07240.1 | Symbols: UGT71C5 | UDP-glucosyl transferase 71C5
| chr1:2223691-2225452 FORWARD LENGTH=1762
Length=1762
Score = 2119 bits (1147), Expect = 0.0
Identities = 1363/1467 (93%), Gaps = 16/1467 (1%)
Strand=Plus/Plus
Query 54 AAGAGAAAAAAGTATAGAGATGAAGAAAGCAGAGCTCATATTCGTTCCTCTGCCGGAGAC 113
|||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AAGAAAAAAAAGTAAAGAGATGAAGACAGCAGAGCTCATATTCGTTCCTCTGCCGGAGAC 239
Query 114 CGGCCATCTTTTGTCCACGATCGAGTTCGGAAAGCGTCTGCTCATTCTAGACCGTAGGAT 173
||||||||| ||||| ||||||||||| ||||||||||| |||| |||||||||| ||||
Sbjct 240 CGGCCATCTCTTGTCAACGATCGAGTTTGGAAAGCGTCTACTCAATCTAGACCGTCGGAT 299
Query 174 TTCCATGATTACAATCCTATCCATGAATCTCCCTTACGCTCCTCACGCCGACGCTTCTCT 233
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 TTCTATGATTACAATCCTCTCCATGAATCTTCCTTACGCTCCTCACGCCGACGCTTCTCT 359
Query 234 TGCTTCGCTCACAGCCTCCGAGCCTGGAATCCGACTCATCAGTCTCCCGGAGATCCACGA 293
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 360 TGCTTCGCTAACAGCCTCCGAGCCTGGTATCCGAATCATCAGTCTCCCGGAGATCCACGA 419
Query 294 TCCACCTCCGATTAAGCTTCTTGACACTTCCTCCGAGACTTACATCCTCGATTTCGTCGA 353
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 420 TCCACCTCCGATCAAGCTTCTTGACACTTCCTCCGAGACTTACATCCTCGATTTCATCCA 479
Query 354 TCAAAACATACCATGTCTTAGAAAAACCATCCAAGATTTAG--TC-TCATCATCATCTTC 410
| |||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 480 TAAAAACATACCTTGTCTCAGAAAAACCATCCAAGATTTAGTCTCATCATCATCATCTTC 539
Query 411 CGGAGATGGT--T-GTCATGTCGCCGGCTTGATTCTTGATTTCTTCTGCGTCT-CTTTGA 466
||||| |||| | ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 540 CGGAGGTGGTAGTAGTCATGTCGCCGGCTTGATTCTTGATTTCTTCTGCGT-TGGTTTGA 598
Query 467 TCGACATCGGCCGTGAGGTAAACCTTCCTTCCTATATCTTCATGACTTCCAACTTCGGTT 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 599 TCGACATCGGCCGTGAGGTAAACCTTCCTTCCTATATCTTCATGACTTCCAACTTTGGTT 658
Query 527 TCTTAGGGGTTCTACAGTATCTCCCGCAACGACATCGTTTTACTGCGTCGGAGTTCGATG 586
|||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||
Sbjct 659 TCTTAGGGGTTCTACAGTATCTCCCGGAACGACAACGTTTGACTCCGTCGGAGTTCGATG 718
Query 587 AGAGCTCC-GCTGGA-GAAGAGTTAC-TGATTCCGGCGTTCGTTAGCCGTGTTCCCGCCA 643
|||||||| || || |||||||||| | ||||||||||| || | ||||||||||||||
Sbjct 719 AGAGCTCCGGC--GAGGAAGAGTTACAT-ATTCCGGCGTTTGTGAACCGTGTTCCCGCCA 775
Query 644 AGGTTCTGCCGCCTGGTGTGTTCGATAAACTCTCTTACGGGTCTCTGGTCAAAATTGGCG 703
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 AGGTTCTGCCGCCAGGTGTGTTCGATAAACTCTCTTACGGGTCTCTGGTCAAAATCGGCG 835
Query 704 AGCGACTACATGAAGCCAAGGGTATTTTGGTCAATTCCTTTACCGAAGTCGAGCCTTATG 763
||||| ||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||
Sbjct 836 AGCGATTACATGAAGCCAAGGGTATTTTGGTTAATTCATTTACCCAAGTGGAGCCTTATG 895
Query 764 CTGCTGCACATTTTTCTCCAGGACGAGATTACCCTCACGTGTATCCTGTTGGGCCGGTTC 823
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTGCTGAACATTTTTCTCAAGGACGAGATTACCCTCACGTGTATCCTGTTGGGCCGGTTC 955
Query 824 TCAACTTAACGGGCCGTACAAATCCGGGTCTAGCTTCGGCCCAATACGAAGAGATGATGA 883
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 TCAACTTAACGGGCCGTACAAATCCGGGTCTAGCTTCGGCCCAATATAAAGAGATGATGA 1015
Query 884 AATGGCTTGACGAGCAACCAGACTCGTCGGTTTTGTTCCTGTGTTTCGGGAGCATGGGAG 943
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGTGGCTTGACGAGCAACCAGACTCGTCGGTTTTGTTCCTGTGTTTCGGGAGCATGGGAG 1075
Query 944 TCCTCCCTGCACCTCAGATTACAGAGATAGCTCACGCGCTCGAGCACATCGGGTGCAGAT 1003
|| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |
Sbjct 1076 TCTTCCCTGCACCTCAGATCACAGAGATTGCTCACGCGCTCGAGCTTATCGGGTGCAGGT 1135
Query 1004 TCATCTGGGCGATCCGTACGAATATGGCCGGAGACGGCGATCCTCATGAGCCGCTTCCAG 1063
|||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 1136 TCATCTGGGCGATCCGTACGAACATGGCGGGAGATGGCGATCCTCAGGAGCCGCTTCCAG 1195
Query 1064 AAGGATTCGTCCATCGAACAATGGGCCGTGGAATTGTGTGTAGTTGGGCTCCACAAGTGG 1123
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AAGGATTTGTCGATCGAACAATGGGCCGTGGAATTGTGTGTAGTTGGGCTCCACAAGTGG 1255
Query 1124 ATATCTTGGCCCACAAGGCAGCAGGTGGATTTGTATCTCACTGTGGGTGGAATTCTGTAC 1183
|||||||||||||||||||| |||||||||| || |||||||| ||||||||||| || |
Sbjct 1256 ATATCTTGGCCCACAAGGCAACAGGTGGATTCGTTTCTCACTGCGGGTGGAATTCCGTCC 1315
Query 1184 AGGAGAGTCTGTGGTACGGCGTACCAATTGCCACGTGGCCGATGTATGCGGAGCAACAGC 1243
| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||| |
Sbjct 1316 AAGAGAGTCTATGGTACGGTGTACCTATTGCAACGTGGCCAATGTATGCGGAGCAACAAC 1375
Query 1244 TGAACGCATTTGAGATGGTGAAGGAGCTGGACTTAGCCGTGGAGATAAGGCTTGATTACG 1303
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||
Sbjct 1376 TGAACGCATTTGAGATGGTGAAGGAGTTGGGCTTAGCAGTGGAGATAAGGCTTGACTACG 1435
Query 1304 TGGCTGATGGTGATAGGGTTACTTTGGAGATTGTATCAGCCGATGAAATAGCCATAGCCG 1363
|||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 1436 TGGCGGATGGTGATAGGGTTACTTTGGAGATCGTGTCAGCCGATGAAATAGCCACAGCCG 1495
Query 1364 TCCGATCATTGATGGATAGTGATAACCCTGTGAGAAAGAAGGTTAAAGAGATATCAGCAG 1423
|||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||
Sbjct 1496 TCCGATCATTGATGGATAGTGATAACCCCGTGAGAAAGAAGGTTATAGAAAAATCTTCAG 1555
Query 1424 AGGCAAGGAAAGCTGTTGGTGATGGTGGATCTTCTATGGTGGCCACAGG-AACTTTTATC 1482
||| ||||||||||||||||||||||| ||||||| |||||||||| | || |||||||
Sbjct 1556 TGGCGAGGAAAGCTGTTGGTGATGGTGGGTCTTCTACGGTGGCCACATGTAA-TTTTATC 1614
Query 1483 AGAGATATTCTTGGGGATCACTTTTGA 1509
| |||||||||||||||||||||||||
Sbjct 1615 AAAGATATTCTTGGGGATCACTTTTGA 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5