BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470743
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07260.1 | Symbols: UGT71C3 | UDP-glucosyl transferase 71C3 ... 2257 0.0
> AT1G07260.1 | Symbols: UGT71C3 | UDP-glucosyl transferase 71C3
| chr1:2227594-2229319 REVERSE LENGTH=1726
Length=1726
Score = 2257 bits (1222), Expect = 0.0
Identities = 1499/1628 (92%), Gaps = 37/1628 (2%)
Strand=Plus/Plus
Query 31 AAGTATTAAACAC-AGTGACAGAGAGAGAAGAAAGAAGAGGACGATGAAAGCAGAAGCAG 89
||| ||||||||| || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 99 AAGCATTAAACACAAG-AATAGAGAGAGAAGAAAGAAGAAGACGATGAAAGCAGAAGCAG 157
Query 90 AAATTATCTTTGTTACATATCCAGCCCCTGGTCATCTTCTTGTCTCCATCGAATTCGCTA 149
| || ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 158 AGATCATCTTCGTTACATATCCATCCCCTGGTCATCTTCTTGTCTCCATTGAATTCGCTA 217
Query 150 AATCTCTCATCAAACGTGATGATGGCATCCACACCATCACCATCCTCCACTGGGCATTAC 209
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct 218 AATCTCTCATCAAACGTGATGATCGCATCCACACCATCACCATCCTCTACTGGGCTTTAC 277
Query 210 CTCTCGCTCCTCAAGCCCACCTCTTCGCCAAGTCTCTCGTTGCTTCAGAGCCTCGAGTCC 269
|||||||||||||||||||||| ||||| ||||| |||||||||||| |||||||| |||
Sbjct 278 CTCTCGCTCCTCAAGCCCACCTTTTCGCTAAGTCCCTCGTTGCTTCACAGCCTCGAATCC 337
Query 270 GTCTCGTTGCTTTGCCTGATGTTCAGAACCCTCCGCCATTGGAGCTCTTCTTTAAAGCCC 329
||||| |||| |||||||||||||| |||||||| |||||||| |||||||||||||| |
Sbjct 338 GTCTCCTTGCGTTGCCTGATGTTCAAAACCCTCCACCATTGGAACTCTTCTTTAAAGCTC 397
Query 330 CCGAGGCTTATATTCTTGAGTCCACCAAGAAAACAGTTCCTTTAGTCAGAGACGCTCTCT 389
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CCGAAGCTTATATTCTTGAGTCCACCAAGAAAACAGTTCCTTTAGTCAGAGACGCTCTCT 457
Query 390 CCACTCTA-TTTACTTCACGTAATGAATCCGGTTCGGTTCGTGTCGTCGGTTTGGTTATC 448
|||||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 458 CCACTCTAGTTT-CTTCACGTAAAGAATCCGGTTCGGTTCGTGTAGTCGGTTTGGTTATC 516
Query 449 GATTTCTTCTGTGTTCCAATGATCCAAGTGGCAAACGAGTTTAACCTTCCTTCTTACATT 508
||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 517 GATTTTTTTTGTGTTCCAATGATCGAAGTGGCAAACGAGCTTAACCTTCCTTCTTACATC 576
Query 509 TTCCTAACGTGTAACGCTGG-TCTTTTAAGTATGATGAAGTATCTCCCTGAGAGACATTG 567
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 577 TTCCTAACGTGTAACGCTGGGT-TTTTAAGTATGATGAAGTATCTCCCTGAGAGACATCG 635
Query 568 CATAACTGCTTCTGAGCTAGATTTAAGCTCCGGCGACGTAGAACATCCAATTCCCGGCTA 627
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 636 CATAACCACTTCTGAGCTAGATTTAAGCTCCGGCAACGTAGAACATCCAATTCCTGGCTA 695
Query 628 TGTCTGCTCCGTGCCGACGAAGGTTTTGCCTCCAGGTCTATTCGTGAGTGAGTCATACAA 687
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 696 CGTCTGCTCCGTGCCGACGAAGGTTTTGCCTCCAGGTCTATTCGTGAGAGAGTCCTACGA 755
Query 688 GGCTTGGGTCGAGATTGCAGAAAAGTTCCCTGGAGCCAAGGGTATTTTGGTAAACTCATT 747
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 756 GGCTTGGGTCGAGATTGCAGAGAAGTTCCCTGGAGCCAAGGGCATTTTGGTAAACTCAGT 815
Query 748 CACATGTCTTGAGCAGAACGCATTTGATTACTTCGCTCGTCTTCG-TGAGAGCTACCCTC 806
|||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| ||||
Sbjct 816 CACATGTCTTGAGCAGAATGCATTTGATTACTTCGCTCGTCTT-GATGAGAACTATCCTC 874
Query 807 CGGTTTACCCGGTCGGACCGGTTCTTAGTTTGAAGGATCGTCCGTCTCCGGACCTGGACC 866
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 875 CGGTTTACCCGGTCGGACCGGTTCTTAGTTTGAAGGATCGTCCGTCTCCAAATCTGGACG 934
Query 867 CATCGGACCGGGACCGGATCATGAGATGGCTCGAGGACCAGCCGGAGTCGTCAATTGTGT 926
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 CATCGGACCGGGATCGGATCATGAGATGGCTCGAGGACCAGCCGGAGTCGTCAATTGTGT 994
Query 927 ACATCTGCTTCGGAAGCCTCGGAATCATTGGCAAACCGCAAATTGAAGAGATAGCTCAAG 986
| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||
Sbjct 995 ATATCTGCTTCGGAAGCCTCGGAATCATTGGCAAGCTGCAGATTGAAGAGATAGCTGAAG 1054
Query 987 CCTTAGAACTCACCGGCCACCGGTTTCTTTGGTCCATCCGTACAAATCCTACGGAGAAAG 1046
|||| ||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 1055 CCTTGGAACTCACCGGCCACAGGTTTCTTTGGTCAATACGTACAAATCCGACGGAGAAAG 1114
Query 1047 CGAGCCCGTACGATCTGTTGCCGGAGGGATTTCTCGATCGGACGGCTTGTAAGGGACTGG 1106
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1115 CGAGCCCGTACGATCTGTTGCCGGAGGGATTTCTCGATCGGACGGCCAGTAAGGGATTGG 1174
Query 1107 TGTGCGATTGGGCTCCGCAAGTGGAAGTGCTGGCCCATAAAGCGATCGGAGGATTCGTGT 1166
|||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1175 TGTGTGATTGGGCCCCGCAAGTAGAAGTTCTGGCCCATAAAGCGCTCGGAGGATTCGTGT 1234
Query 1167 CTCACTGTGGTTGGAACTCCGTGCTGGAGAGCTTATGGTTCGGTGTTCCGATCGCCACGT 1226
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1235 CTCACTGCGGTTGGAACTCTGTACTGGAGAGCTTATGGTTCGGTGTTCCGATCGCCACGT 1294
Query 1227 GGCCAATGTACGCTGAACAACAGCTAAACGCGTTCACGATGGTGAAGGAGTTAGGGTTAG 1286
|||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1295 GGCCAATGTACGCTGAGCAACAGTTAAACGCATTCTCGATGGTGAAGGAGTTAGGGTTAG 1354
Query 1287 CCGTGGAGCTGCGTTTAGATTACGTTTCGGCGTACGGAGAGATAGTAAAAGCTGAGGAGA 1346
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CCGTGGAGCTGCGTTTAGACTACGTTTCGGCGTACGGAGAGATAGTAAAAGCTGAGGAGA 1414
Query 1347 TCGCAGGAGCCATACGATC-TCTGATGGACGGTGAGGATACACCGAGGAAGAGAGTGAAG 1405
|||| |||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 1415 TCGCGGGAGCCATACGATCAT-TGATGGACGGTGAGGATACGCCGAGGAAGAGAGTGAAG 1473
Query 1406 GAGATGGCAGAGGCGGCGAGGAAGGCTTTGATGGACGAAGGATCTTCCTTTCTTGCGGTT 1465
|||||||| || ||||||||||| ||||||||||||| ||||||||| ||| ||||||||
Sbjct 1474 GAGATGGCGGAAGCGGCGAGGAATGCTTTGATGGACGGAGGATCTTCGTTTGTTGCGGTT 1533
Query 1466 AAAGGATTCCTCGACGAGTTGATCGGCGGGGATGTTTAGTTCTATTATAAACGTCGTCGT 1525
||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1534 AAACGATTTCTCGACGAGTTGATCGGCGGAGATGTTTAGTTCTATTATAAACGTCGTCGT 1593
Query 1526 T-GTTGCGTGTTTTGCTTTCAATCG-TT-T--CT---------A---TTT--GGTT--T- 1563
| || |||||||||| ||||||||| || | || | ||| |||| |
Sbjct 1594 TCGT-GCGTGTTTTGTTTTCAATCGCTTCTAACTTTTTTGGGTACAATTTCAGGTTGGTT 1652
Query 1564 -GGATTTGGTTA--GTCGGTTTAAGCTTAGACATCAACTTAAAATAAAATTCCCAAGAAA 1620
||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||
Sbjct 1653 TGGATTTGGTTAAAGTCGGTTTAAGTTTAGACATCAACTTAAA-TAAAATTCCTAAGAAA 1711
Query 1621 CTGAATCA 1628
|||||||
Sbjct 1712 TTGAATCA 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5